Massilia litorea: LPB04_15675
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Entry
LPB04_15675 CDS
T09729
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mlir
Massilia litorea
Pathway
mlir03030
DNA replication
mlir03410
Base excision repair
mlir03420
Nucleotide excision repair
mlir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB04_15675 (ligA)
03410 Base excision repair
LPB04_15675 (ligA)
03420 Nucleotide excision repair
LPB04_15675 (ligA)
03430 Mismatch repair
LPB04_15675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mlir03032
]
LPB04_15675 (ligA)
03400 DNA repair and recombination proteins [BR:
mlir03400
]
LPB04_15675 (ligA)
Enzymes [BR:
mlir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LPB04_15675 (ligA)
DNA replication proteins [BR:
mlir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPB04_15675 (ligA)
DNA repair and recombination proteins [BR:
mlir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LPB04_15675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPB04_15675 (ligA)
MMR (mismatch excision repair)
DNA ligase
LPB04_15675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPB04_15675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QOL52067
UniProt:
A0A7L9UB10
LinkDB
All DBs
Position
3482236..3484557
Genome browser
AA seq
773 aa
AA seq
DB search
MKALVEELNRHIYNYHVLDAPTIPDAEYDRMFRELQALEAAHPEAVSPDTPTSRVGAAPI
PEFRQVTHAVPMLSLNNGFADEDVDNFDRRVREGLDNGEVAYAAELKFDGLAMSLRYENG
VFVQAATRGDGYTGEDVTANIRTVRVIPLRLHGGDIPQVLEVRGEVLMFKEDFAKLNQRQ
RDAGQKEFANPRNAAAGSLRQLDARITAQRKLRFFAYGIGLLEGAPMPESHSAVLDWFDR
LGLPVSKERAVVTGRDGLLGYYRSIGEKRPGLPYEIDGVVYKVDRLADQRALGFVSRAPR
FALAHKFPAEEALTTVSAIDVQVGRTGAITPVARLVPVSVGGVTVTNATLHNEDEVRRKD
VRVGDTVVVRRAGDVIPEVLSVVLERRPVPEPPIYTLPGTCPVCGSHVVREEGESVARCS
GGLSCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVECSLIHGVADLYKLTLDDLLKMKR
LADERDGSTPETVKQGKVPTKWADNLLNAIAASKRPPLERLLFALGIRHVGESTAKTLAD
WLGSLALVRRAPAALLRVLPDIGGTVAESIADFFAEPKNQAALDALLETGVAPQGEHPPK
AALRERLDEVELLAALGIPKLTEPRARQLLAGRTLDDLAHLRVFSVFGLPENLVAALEAW
MAAPGKRETVQALADLRRELLAQLPEESDALDAGALSGQTFVLTGTLPTMSRDEAGALIE
AAGGKVSGSVSKKTSYVVAGAEAGSKLAKAESLGVTVLDEAGLLALLAGANAT
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgctcgtcgaggaactgaaccgccacatctacaactaccacgtccttgacgcg
ccgacgattccggacgccgagtacgaccgcatgttccgcgaactgcaggcgctggaagcg
gcgcacccggaagcagtctcgcccgacacgcccacctcgcgcgtgggcgccgccccgatc
cccgagttcaggcaggtgacgcatgcggtgccgatgctctcgctgaacaacggttttgcc
gatgaagacgtcgacaatttcgaccgccgcgtgcgtgaaggactcgacaacggcgaggtc
gcctatgccgccgagctgaaattcgacggcctggcgatgagcctgcgctacgagaacggc
gtgttcgtgcaggccgccacccgcggcgacggctacacgggcgaagacgtcaccgccaac
atccgcaccgtgcgcgtgatcccgctgcgcctgcatggcggcgacatcccgcaggtgctg
gaagtgcgcggcgaagtcctgatgttcaaggaagacttcgcgaagctgaaccagcgccag
cgcgacgccggccagaaggaatttgccaatccgcgcaacgccgccgccggcagcctgcgc
cagctcgacgcccgcatcacggcccagcgcaagctgcgcttcttcgcctacggtatcggc
ctgctcgaaggtgcgccgatgcccgaatcgcattcggccgtgctcgactggttcgaccgt
ctcggcctgccggtgtcgaaggaacgcgcggtcgtcacgggccgcgacggcctgctcggc
tactaccgcagcatcggcgagaagcgtccgggcctgccctacgagatcgacggcgtggtc
tacaaggtcgaccgcctggcggaccagcgcgcgctcggtttcgtgtcgcgtgcgccgcgt
ttcgcgctggcccataaattcccggccgaggaagcgctgacgacggtgtccgcgatcgac
gtgcaggtcggccgcaccggcgcgatcaccccggtggcgcggctggtgccggtgtcggtc
ggcggcgtgaccgtcaccaacgccaccctgcacaacgaggacgaggtacgccgcaaggac
gtgcgcgtgggcgacacggtcgtcgtgcgccgcgccggcgacgtgatacccgaggtgctg
tcggtggtgctcgagcgccgcccggtgccggagccgccgatctacacgctgccgggcacc
tgtccggtgtgcggctcgcacgttgtgcgcgaagagggcgaatcggtggcccgctgctcg
ggaggcctcagttgcgcggcccagcgcaaggaagcgatccgccacttcgccggccgccgc
atgatggacatcgagggcctgggcgaccgctatatcgacagcctggtcgagtgcagcctg
atccacggcgtggccgacctgtacaaactgaccctcgacgatttgctgaagatgaagcgc
ctggcggacgagcgcgacggcagcactccggagacggtaaaacagggcaaagtgccgacc
aaatgggccgacaacctgctcaatgcgatcgccgccagcaagcggccgccgctcgaacgc
ctgctgttcgcgctcggcatccggcatgtgggcgaatcgacggcgaaaaccctggccgac
tggctgggttcgctggcgctggtgcgccgcgcgcccgccgccttgctgcgcgtgctgccg
gatatcggcggcaccgtggccgaatcgatcgccgacttcttcgccgaaccgaagaaccag
gccgcgctcgacgcgctgctggagaccggcgtggcgccgcagggcgagcacccgccgaag
gccgcgttgcgcgagcgcctggacgaagtggaactgctggccgcgctcggcattccgaaa
ctgaccgagccgcgcgcgcgtcagctgctggctggacgcacgctcgacgacctggcccac
ctgcgcgtgttcagcgtcttcggattgcccgagaacctggtcgccgcgctcgaggcgtgg
atggcggcgccgggcaagcgcgagacggtgcaagcgctggccgacctgcgccgggaactg
ctggcgcagctgcccgaggagtcggacgcccttgatgcgggcgcattgtccgggcagact
ttcgtcctgaccgggacactgccgacgatgtcgcgcgatgaagccggcgcgctgatcgag
gctgcaggtggcaaggtgtccggttcggtgtcgaagaagacctcatatgtcgtcgcgggc
gcggaggccggcagcaagctggccaaagccgagtcgctcggcgtgaccgtgctcgacgaa
gcgggcctgctggccctgctcgccggggcgaacgccacatga
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