Mesorhizobium japonicum MAFF 303099: mll1539
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Entry
mll1539 CDS
T00043
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mlo
Mesorhizobium japonicum MAFF 303099
Pathway
mlo03030
DNA replication
mlo03410
Base excision repair
mlo03420
Nucleotide excision repair
mlo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
mll1539
03410 Base excision repair
mll1539
03420 Nucleotide excision repair
mll1539
03430 Mismatch repair
mll1539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mlo03032
]
mll1539
03400 DNA repair and recombination proteins [BR:
mlo03400
]
mll1539
Enzymes [BR:
mlo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
mll1539
DNA replication proteins [BR:
mlo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
mll1539
DNA repair and recombination proteins [BR:
mlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
mll1539
NER (nucleotide excision repair)
GGR (global genome repair) factors
mll1539
MMR (mismatch excision repair)
DNA ligase
mll1539
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
mll1539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Zn_ribbon_PaaD
Nlig-Ia
RUBY_RBDX
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
BAB48890
UniProt:
Q98KC4
LinkDB
All DBs
Position
complement(1279308..1281512)
Genome browser
AA seq
734 aa
AA seq
DB search
MAEKPVDSLSESEAEAELKRLAEEIAGHDRRYHAEDAPTITDAEYDALRRRNLAIEERFP
GLVREDSPSRRVGAPPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDRDKDLDI
AFTAEPKIDGLSASLRYENGVFVQGATRGDGAVGEDITANLRTIADIPAKLKGSGWPDVI
EIRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFAYAWG
FTTADPAPTQYESVQKFADWGFKISPLMVRAKSVEELVAQYHLIEEQRSSLGYDIDGVVY
KVDQLELQRRWGFVTGEPRWAVAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVG
GVVVENVTLHNEDYIKGFDSNGLPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPAD
AVPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSRGALDIE
GLGAENIDTFFNAGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKNVRS
VEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLAKTFSTIEELIRVGKE
TAAAEDPHTVFPSVNGIGDTVIDALCDFFGNERNDDVLDKLLEQVKPKPYIVTVSADSEV
AGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASELGVE
VIDEDTWLQRVGKA
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaaaacctgtcgattcgctcagcgaaagcgaggctgaagccgagctgaagcgc
ctggcggaggagatcgccgggcacgaccggcgctaccatgccgaggacgcgcccacgatc
acggacgccgaatatgatgcgctgcggcggcgcaaccttgccatcgaggagcgttttccc
ggcctggtgcgcgaggattcgccgtcgcgcagggtcggtgcgccgccggcggagggcttt
gccaaggtgcgccatgccgtgccgatgctcagcctcgccaaggcctataccgacgaggat
gtcaccgatttcatcgagcgcggccggcgcttcttcgaccgcgacaaggacctcgatatc
gccttcaccgccgaaccgaagatcgacgggctgtcggcgtcgttgcgctatgagaatggc
gtgttcgtgcagggcgcgacgcgcggcgacggcgccgtcggtgaggacatcaccgccaat
ctccgaaccatcgccgatatccccgcgaagctgaaaggctcgggctggccggatgtcatc
gagatacgcggcgaggtctacatgacctatgcggagttcgaggcgctgaaagcgcgctcg
gcggcggccggcggccaggattacgtcaatccgcgcaacacggcggccggctcgctgcgc
cagaaggatgcttcggtcacagccagccgcaatctcaaattcttcgcctatgcctggggc
ttcacgaccgcggatccagcgccgacccagtatgaatcggtgcaaaaattcgcggactgg
gggttcaagatcagccctttgatggtgcgggcgaagtcggtcgaggaactggtcgcgcag
taccatctgatcgaggagcaacgctcctcgctcggctatgacattgatggtgtcgtctac
aaggtcgaccagctggagttgcagcgccgctggggtttcgtcaccggtgaaccgcgctgg
gcggttgcccacaaattcccggccgaacaggcaatgacgaccgtgcagaagatcgacatc
caggttggccgtaccggcacgctggcgccggtcgcaaggcttgcgcccgtcaccgttggc
ggcgtcgtggtcgaaaatgtcacgctgcacaatgaggactacatcaaggggttcgacagc
aacggcctgccgatccgcgacggcatcgacgtgcgcatcggcgacacggtggtgatccag
cgggcgggagacgtcattccgcagatcgtcagtgtcgtcatcgacaagcgtccggccgat
gccgtgccttacgaattcccgcacacctgtccggtctgcggctcgccggcgacgcgcgag
atcaacgagaagaccggcaaggaggattcccgccgacgctgcaccggcgaactgatctgc
gccgcgcaagccgtggaaagattgcgccatttcgtctcgcgcggggcgctcgatatagag
ggactgggcgccgaaaacatcgacactttcttcaatgccgggctgatcaagaccgccgcc
gatatttttacgctcagggatcgccgtcccgccgtcaccaaggcgctggccgagcgacgc
gaggagcaggccaggcagcgcgaagcggcgtccggcaagacgcgcaagaacgtgcgcagt
gtcgaggatcgcaactatgaaggcctcgacaagctgttcgcagccatcgattcgcgccgc
gaaccggagctcgatcgcttcatcttcgcgctcggcatccgccacatcggcgagacgacg
gcggccgtgctcgccaagaccttttccaccatcgaggaactgatccgcgtcggcaaagag
acggcggcggcggaggatccgcacaccgtcttcccatcggtcaacggcatcggtgacacg
gtgatcgatgcgctgtgcgatttcttcggcaatgagcgcaatgacgacgtgctcgacaag
ctgctcgagcaggtcaagcccaagccctatatcgtcaccgtctcggccgacagcgaggtc
gccggcaagaccatcgtcttcaccggcacgctggagaagatgacgcgctcggaagccaag
gcgatggccgaacgtctcggcgcaaaggtcgccggctcggtttcggccaagaccgacctg
ctggtcgccggacccggcgccggctccaagctcaagcttgccagcgaactcggcgtcgaa
gtcatcgacgaggacacctggctgcaacgggtcggcaaggcgtga
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