Marinobacter sp. LQ44: ASQ50_02170
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Entry
ASQ50_02170 CDS
T04470
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mlq
Marinobacter sp. LQ44
Pathway
mlq03030
DNA replication
mlq03410
Base excision repair
mlq03420
Nucleotide excision repair
mlq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mlq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ASQ50_02170 (ligA)
03410 Base excision repair
ASQ50_02170 (ligA)
03420 Nucleotide excision repair
ASQ50_02170 (ligA)
03430 Mismatch repair
ASQ50_02170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mlq03032
]
ASQ50_02170 (ligA)
03400 DNA repair and recombination proteins [BR:
mlq03400
]
ASQ50_02170 (ligA)
Enzymes [BR:
mlq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ASQ50_02170 (ligA)
DNA replication proteins [BR:
mlq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ASQ50_02170 (ligA)
DNA repair and recombination proteins [BR:
mlq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ASQ50_02170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ASQ50_02170 (ligA)
MMR (mismatch excision repair)
DNA ligase
ASQ50_02170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ASQ50_02170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AMQ87581
UniProt:
A0A142FM72
LinkDB
All DBs
Position
complement(458134..460170)
Genome browser
AA seq
678 aa
AA seq
DB search
MSQVSADIQQRVEQLRAALDDHNYYYYVLDDPRIPDAEYDRLFRELQTLEADYPELASDN
SPTRRVGSAAETSFEEVTHRLPMLSLDNAFSDDELRDFDRRVRDRLATEDPVEYVCEPKL
DGLAVSLHYERGVLTRAATRGDGYTGEDITANIRTIPSVPLTLRGDDFPDLVEVRGEVYM
PKAGFEQLNRRLAEQGEKTFVNPRNAAAGSLRQKKSTVTAKRPLELCAYSMAVTDESLLP
ETHWESLQQVRGWGFRINPEMRKAMGVEACLEAYQELMAKRDTLPYEIDGIVFKVNRLEL
QQQLGFVSRAPRWAIAHKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEIRRLDVHIGDTVFIRRAGDVIPQVVKVVPEKRPEGAVEVVMPSQCPVCDSDIV
QIEGEAVARCSGGLYCPAQRKEAIRHYASRKAMDIEGLGDRLIEVLVDEGMVNTVADLYR
LTRFQLASLDRMGDKSAANLVAAIDRARHPVLWRFLYALGIREVGEATAKSLASHFGTLE
AVSEADDEALQAVPDVGPIVAGHIHSFFDQPHNQETLQALRDAGVSWQEEQVVPAEAKPL
AGETWVLTGTLSQMTRDQAKEKLEKLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLGVP
VLDEDGLLALLKEHGIEG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagccaggtttctgccgatatccagcagcgcgtggaacagttgcgcgccgccctggac
gatcataactactattattacgttctcgatgaccccaggatacccgacgccgaatacgat
cggctgttccgcgaactccagacactggaagcagactacccggagctggcttcagataac
tcgcccacccggcgggttggcagtgctgcggaaaccagttttgaagaagttacccatcgg
ttgcccatgttgtcattggataatgcgttcagtgacgacgagctccgtgatttcgaccgc
cgcgtgcgtgaccgtctggcaaccgaagatccggtggaatatgtctgtgagccgaagctg
gatggccttgcggtcagcctgcactatgagcggggtgtactgactcgggcggccacccgg
ggcgatggttataccggggaggatatcactgccaatatccgtaccattccgtcagttccc
ctgaccttacgaggcgacgacttcccggacctggtggaggtccggggtgaggtgtatatg
cccaaggccgggtttgagcaactgaaccggcgcctcgctgagcaaggtgaaaagaccttt
gtaaaccccagaaacgccgctgccggcagcctgcgccagaagaaatcaacggtcaccgcc
aagcgtcccctggaactttgtgcctacagcatggccgtcactgacgaaagcctgctgcca
gaaacccactgggaaagcctgcagcaggttcgaggctgggggttccgcattaatccggaa
atgcgtaaggccatgggggttgaagcctgccttgaggcttaccaggagttgatggccaag
cgcgacaccctgccgtacgaaatagatggcatcgtgttcaaggtgaaccgtctggagttg
cagcaacaactgggttttgtgtcgcgggcgccccggtgggcgattgcccacaagtttccc
gcccaggaagaactgaccgttattgaagatgtggagttccaggtgggccggactggcgct
gtcacgcctgttgcccggctcaagccggtgttcgtgggtggcgtgaccgtttccaacgca
acactccacaacatggacgagattcgccggctggatgtgcacatcggcgacacggtgttc
atacgccgcgctggcgatgtcattccgcaagtggtgaaggtggttccggaaaaacgcccc
gaaggcgcagttgaagtggttatgccgagccagtgcccggtctgtgactcggacatcgtc
cagatagaaggggaggcggtcgctcgttgttccggggggctgtactgccccgctcagcgc
aaggaagctattcgtcattacgcttcccgcaaggccatggatatcgaaggtctgggtgac
cggctcattgaagtgctggtggatgaaggcatggtgaacaccgtggcggatctgtatcgg
cttacccggttccagttggccagcctggataggatgggcgataaatccgctgctaatctg
gttgccgcgattgatcgcgcccgccatccggtgttgtggcgttttctgtacgctctgggt
atccgggaagtcggggaggctacggcgaagtcgcttgcctcacatttcggtaccctggaa
gccgtgtccgaggcggacgatgaggccctacaggcagtcccagacgtggggcctatcgtg
gcgggccatatccatagtttcttcgaccagccccacaaccaggaaaccctgcaggctttg
agagacgcaggggtaagctggcaggaagagcaggtggtccctgccgaggccaaacccctt
gccggggaaacctgggtgctgaccggcactctgtcacaaatgacaagggaccaggcgaag
gaaaaactggaaaagctgggggccaaagtggccggcagtgtttcgaagaaaaccgcttgt
gtggtggccggcgaggccgctggctccaaactggccaaggcggaacaactgggagtgcct
gtgctggatgaagatgggcttctcgctctgttgaaggagcatggcatagaaggctga
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