Flagellimonas lutaonensis: VC82_3050
Help
Entry
VC82_3050 CDS
T03884
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mlt
Flagellimonas lutaonensis
Pathway
mlt03030
DNA replication
mlt03410
Base excision repair
mlt03420
Nucleotide excision repair
mlt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VC82_3050
03410 Base excision repair
VC82_3050
03420 Nucleotide excision repair
VC82_3050
03430 Mismatch repair
VC82_3050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mlt03032
]
VC82_3050
03400 DNA repair and recombination proteins [BR:
mlt03400
]
VC82_3050
Enzymes [BR:
mlt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VC82_3050
DNA replication proteins [BR:
mlt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VC82_3050
DNA repair and recombination proteins [BR:
mlt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VC82_3050
NER (nucleotide excision repair)
GGR (global genome repair) factors
VC82_3050
MMR (mismatch excision repair)
DNA ligase
VC82_3050
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VC82_3050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH
Auto_anti-p27
5_3_exonuc
Zn_ribbon_Top1
RNA_ligase
AphA_like
Motif
Other DBs
NCBI-ProteinID:
AKA36593
UniProt:
A0A0D5YXM5
LinkDB
All DBs
Position
complement(3266716..3268710)
Genome browser
AA seq
664 aa
AA seq
DB search
MDIEQKIKTLRKELQEHNYRYYVLDEPTISDYEFDMKLKELQSLEQQHPEFYDPNSPTLR
IGGQVTKNFETVVHEHRMYSLDNSYSKEDLEDWEKRIQRILGDVPLEYVCELKYDGASIS
LTYENGQLVCAVTRGDGFQGDDVTTNVKTIKSVPLKLRGDYPPKFDIRGEIILTLEGFAK
MNQERIENGEEPYMNPRNTASGSLKLQDSALVAQRPLDCLLYSIVGASGLKTQFEVLEKA
RSWGFKVPIVAKLCKSIDEVLKFVEYWDVHRHELPYETDGVVIKVNSLQQQEELGYTAKS
PRWAMAYKFKAEQVATVLNTITYQVGRTGAITPVANLEPVLLAGTTVKRASLHNADQIAK
LDIREGDTVFVEKGGEIIPKIIGVDFTKRDPNSEPTKYIEHCPECGTELLRKEGEAQHFC
PNDTGCPPQITGRIQHFISRRAMDIEGLGGETVELLYKEGLIENYADLYTLTVDQIIPLE
RMAEKSAENLVKGVEASKKIPFERVLFALGIRYVGETVAKKLAKAYKNIDSLMAASEEEL
TTVDEIGERIAQSVVQFFQNPTNQEIIQRLKSYGLQFSLSEEQLQNQSDILKGKTFVVSG
VFEKLSRNELKKLIEDNGGKVASSISSKTCFVVAGANMGPSKKTKAESLGVPIISEQEFL
AMLP
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggacatagaacaaaaaatcaagaccctaagaaaagaattgcaagagcataattataga
tactacgtgcttgatgagccaaccatctctgattatgaattcgatatgaagctcaaggag
ctgcagtcactggagcagcagcacccagagttttatgaccccaattcaccaaccctgcgg
ataggggggcaggttaccaagaattttgagacggtggtacacgagcaccgcatgtactca
ctggacaattcgtactccaaagaagatcttgaagattgggaaaagcgtatccagcggata
ttgggcgatgtaccccttgaatatgtatgcgagctgaaatatgacggggcttccattagc
ctcacctatgaaaatgggcaattggtgtgtgccgtgacccgtggcgatggttttcaggga
gatgatgtcaccaccaatgtcaagaccatcaaatcggtgccgttaaagctacggggcgat
taccctcccaaatttgatattcggggagagattattttgactttggaaggctttgccaag
atgaaccaagagcgcattgaaaatggcgaagaaccctacatgaacccgcgaaacacggcc
tcgggaagcctaaaacttcaagacagtgccttggtggcgcaacgcccactggattgcctt
ttatacagcattgtgggagcatcgggcctcaagacacagttcgaagtgcttgaaaaagcc
cgttcatggggcttcaaggtgcccatcgtggccaaattgtgcaagagcattgatgaggtc
ttgaaatttgtggaatattgggatgtgcaccgtcacgaattgccctacgagaccgatggg
gtggtcataaaggtgaacagtttgcaacaacaagaagagcttggctataccgcaaaatcg
ccacgctgggccatggcgtacaagttcaaggcagaacaggtggccaccgttctcaatacg
attacctatcaagtgggcagaacaggggccataaccccggtggccaatttagaaccggta
ctattggccggtaccacggtaaaacgtgcctcattgcacaatgccgaccaaatcgccaag
ttggacatcagggaaggagacaccgtttttgtggagaaagggggcgagatcattcccaag
atcatcggggtcgattttaccaaacgcgatcccaattctgaacctaccaagtatattgag
cattgccccgaatgtggcaccgaactgttacgaaaagagggcgaggcccaacatttttgt
ccgaacgacacgggttgtccgcctcagattaccgggcgcatccagcacttcatttcacga
agggcaatggatattgaggggttgggcggcgagacggtcgagcttttgtacaaagaagga
cttattgaaaactatgccgatctctacacgttgactgttgaccaaatcattcccctagaa
cgtatggccgaaaaatcggctgagaatttggtcaaaggggtcgaggcctccaaaaagatt
ccttttgaacgggtgttgttcgccctcggtatccgctatgtgggcgaaacggtggccaaa
aagctcgccaaggcctataagaacatcgattcccttatggccgcatccgaagaagaactc
accacggtcgatgaaataggggagcgcattgcccagagtgtggtgcagttttttcaaaat
cccacaaatcaagaaataatccaacgattaaaatcttacgggctgcagttttcactgtct
gaagagcagttgcagaaccaaagcgacatcctaaagggaaaaacctttgtggtatcgggg
gttttcgaaaaactaagtcgaaacgaactcaaaaaactgattgaagacaatgggggcaag
gtggcctcatccatttcatcaaagacctgtttcgtggtagcgggggccaatatggggccc
agtaaaaaaaccaaggccgaaagcctcggggtgccgattatttctgagcaagagtttttg
gcgatgcttccgtga
DBGET
integrated database retrieval system
