Mirounga leonina (Southern elephant seal): 118018039
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Entry
118018039 CDS
T07472
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx04064
NF-kappa B signaling pathway
mlx04622
RIG-I-like receptor signaling pathway
mlx04623
Cytosolic DNA-sensing pathway
mlx05160
Hepatitis C
mlx05161
Hepatitis B
mlx05162
Measles
mlx05164
Influenza A
mlx05168
Herpes simplex virus 1 infection
mlx05169
Epstein-Barr virus infection
mlx05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
118018039 (DDX58)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
118018039 (DDX58)
04623 Cytosolic DNA-sensing pathway
118018039 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
118018039 (DDX58)
05160 Hepatitis C
118018039 (DDX58)
05171 Coronavirus disease - COVID-19
118018039 (DDX58)
05164 Influenza A
118018039 (DDX58)
05162 Measles
118018039 (DDX58)
05168 Herpes simplex virus 1 infection
118018039 (DDX58)
05169 Epstein-Barr virus infection
118018039 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mlx04054
]
118018039 (DDX58)
Enzymes [BR:
mlx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118018039 (DDX58)
Pattern recognition receptors [BR:
mlx04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
118018039 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
NPHP3_N
AAA_25
Motif
Other DBs
NCBI-GeneID:
118018039
NCBI-ProteinID:
XP_034872399
LinkDB
All DBs
Position
Unknown
AA seq
991 aa
AA seq
DB search
MPQPVAGCSFDFLSALEIPKRLHPSALGLSSLVRRSVSARRHQAFKRVGRGRSRDPTGSH
AASMSAEDRRNLHAFQDYVTKTLDPTCILSYMAPWFKDDEVQHIQAEKNNKGTMEAASLF
LKFLLELQEEGWFRGFLDALVHAGYSGLHEAIETWDFQKIESLEEYRILLKRLQPEFKTT
VNPKDILPKISECLISQECEEIIQVCSNKGLMAGAEKMVECLLRSDKENWPKTLKLALEM
DENKFSQLWIVDKDAKNAESKVLEDDEIETSDIQIFYKEEPECQNLSQNLSPPSASPTCT
PLKPRNYQLELALPAKEGENTIICAPTGCGKTFISLLICEHHLKKFPQGQKGKVVFFAIQ
LPVYEQQKSVFSEYFEKLGYKVAGVSGATSENILMEQIVENNDIIILTPQILVNNLRNGT
IPSLSVFTLMIFDECHNTGKHHPYNMIMFNYLDQKLGDSSDPLPQVIGLTASVGIGDAKT
TMEAIEYICKLCASLDTSVIATVKDNLEELEEIVYKPQKFFRKVESRTTDRFKCIISQLM
RETESLAKNIFDKLGTVTLESVSQIQNRNFGTQKYEQWIVSVQKACMVFQLPDKDEESRI
CKALYLYTSHLRKYNDALIINEHARMKDALDYLKDFFTDVRAAGFDETEQHLTQRFEEKL
KELESVSMDPSNENPKLQDLSFILQEEYHLNPESRTILFVKTRALVDALKKWIEENSELS
FLKPGILTGRGKTNHNTGMTLPAQKCALDAFRTDGDKKILIATSVADEGIDIAQCNLVIL
YEYVGNVIRMIQTRGRGRARGSKCFLLTSNADVIEKEKINIYKENMMNDSILRLQTWDKA
VFKEKVLQIQIQEKLIRDSQGKVEPVPDKENKKLLCRKCKGFACYTADIRVVEDCHYAVV
GDAFKKCYVSKLHPKPKTFGHFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV
EDITTGAQKLYAKWKDFPFEKRSFDATEMSE
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgccccagccggttgctggttgcagtttcgatttcctgtctgctcttgagattcccaag
cggctccacccctcagcactgggtctgagttctcttgtcagaagatctgtgtcagcccgc
cgccaccaggctttcaagagagtgggacgcgggcgaagcagggaccccaccgggagccac
gctgctagcatgtcggccgaggatcggcggaatctgcacgccttccaggactatgtcacg
aagactctggaccctacctgcatcctgagctacatggccccctggtttaaggacgatgag
gtacagcatattcaggctgagaaaaacaataagggcacgatggaggctgcctcacttttt
cttaagttcctattggagctccaggaagaaggctggttccgtggctttttggatgccctt
gttcatgcaggttattctggacttcatgaagccattgaaacttgggatttccaaaaaatt
gaaagtctagaggagtatagaatacttttaaagcgtttacaaccagaatttaaaaccaca
gttaatccaaaagatatccttcctaaaatatctgaatgtttaattagtcaggaatgtgaa
gaaattatacaggtttgttccaacaaggggctgatggcaggtgcggagaaaatggttgaa
tgccttctcagatcagacaaggaaaactggcccaaaactttgaaacttgctttggagatg
gacgagaacaagttcagtcaactgtggattgtggacaaagatgcaaaaaatgctgaatcg
aaagttcttgaggatgatgaaatagaaacttctgacatacagattttctataaggaagaa
ccagaatgccagaatcttagtcagaacttatctccaccttcagcctctcctacttgcacc
ccactgaagccaagaaattaccaactagagctcgctttgcctgctaaggaaggagaaaac
acaataatatgtgctcctactggttgtggaaaaacgtttatttcccttcttatatgtgaa
catcatcttaaaaaatttccacaaggacaaaaggggaaggttgtcttttttgctattcaa
ctcccagtgtatgaacagcagaaatccgtgttctccgaatattttgaaaaacttgggtac
aaagttgcaggtgtttctggagcaacatctgagaatatcttaatggaacagattgttgag
aacaatgacatcatcattttaactccacagattcttgtgaataaccttagaaatgggact
attccatcactctctgtctttactttgatgatatttgatgaatgtcacaacactggtaaa
caccatccttataatatgatcatgtttaattatctagatcagaaacttggagattcttca
gacccactgcctcaggtcattgggctgactgcctcggttggcattggggatgccaaaacc
acaatggaagccatagaatatatctgcaaactgtgtgcttctcttgacacatcagtgata
gcaacagtcaaagacaacttggaggaattggaagaaattgtctataagccccagaagttt
ttcaggaaagtggaatcacggactactgacagatttaaatgcatcatatcacagctgatg
agggagacagagagtctggcaaagaatatctttgacaaactcggtaccgtaactctcgaa
agtgtatctcaaattcaaaataggaattttggaacacagaaatatgaacaatggatcgtt
tctgttcagaaggcatgcatggtgtttcagttgcccgacaaagatgaagagagcaggatt
tgtaaagccctctatttgtacacttcccacttgcggaaatataatgatgccctcattatc
aatgagcatgcacggatgaaagatgctctggattacttgaaagacttcttcactgatgtc
cgagctgccggatttgatgagactgagcagcatctcactcagagattcgaagaaaagctg
aaggaactggaaagtgtttccatggatcccagcaatgagaaccctaaactccaagatctc
tccttcatcttgcaagaggagtaccacttaaatccagagagtagaaccatcctctttgtg
aaaaccagagcacttgtggatgctttgaagaaatggattgaagaaaattctgaactcagc
tttctaaaacctggcatattgactggacgtggcaaaacaaatcataacacaggaatgacg
ctcccagcacagaagtgtgcattggatgcattcagaaccgatggagataaaaagattctg
attgctacctcagttgctgatgaaggcattgacattgctcagtgtaatttggtcatcctg
tatgagtatgtgggcaatgtcatcagaatgatccaaaccagaggcagaggaagagcaaga
ggtagcaagtgcttccttctgaccagcaatgctgatgtaattgaaaaagaaaaaataaat
atatacaaagaaaacatgatgaatgactccattttaaggcttcagacgtgggataaagca
gtatttaaagaaaaggttctccagatacagattcaagaaaaattaatcagggatagtcaa
ggaaaagtagaacctgtacctgataaggaaaataaaaagctgctctgccggaagtgcaag
ggctttgcatgttatacagctgacatcagagtggtggaggactgccattacgctgtggtt
ggagatgctttcaagaagtgctatgtgagtaaattacaccccaaaccaaagacctttggg
cattttgagaagagagcaaagatcttctgtgccagacagaactgtagccatgactgggga
atccatgtgaagtataagacatttgagattccagttataaaaatagaaagctttgtggtg
gaggatattacaactggagctcagaaactgtatgccaagtggaaggattttccttttgag
aagagatcctttgatgctacagaaatgtccgaatga
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