Microbacterium lushaniae: F6J85_09800
Help
Entry
F6J85_09800 CDS
T07230
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mlz
Microbacterium lushaniae
Pathway
mlz03030
DNA replication
mlz03410
Base excision repair
mlz03420
Nucleotide excision repair
mlz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mlz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F6J85_09800 (ligA)
03410 Base excision repair
F6J85_09800 (ligA)
03420 Nucleotide excision repair
F6J85_09800 (ligA)
03430 Mismatch repair
F6J85_09800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mlz03032
]
F6J85_09800 (ligA)
03400 DNA repair and recombination proteins [BR:
mlz03400
]
F6J85_09800 (ligA)
Enzymes [BR:
mlz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F6J85_09800 (ligA)
DNA replication proteins [BR:
mlz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F6J85_09800 (ligA)
DNA repair and recombination proteins [BR:
mlz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F6J85_09800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F6J85_09800 (ligA)
MMR (mismatch excision repair)
DNA ligase
F6J85_09800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F6J85_09800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
HHH
Nlig-Ia
PTCB-BRCT
RapZ-like_N
Motif
Other DBs
NCBI-ProteinID:
QEW03365
UniProt:
A0A5J6L4P5
LinkDB
All DBs
Position
complement(2059022..2061349)
Genome browser
AA seq
775 aa
AA seq
DB search
MANGDQLPDLTLDEARTEAADLTTRILDAREAYYGRDAELVDDATYDEWMRRLEQIERLH
PELQGQDSPTQSVGAAESTMFAPVEHAERMLSLDNVFSSDELRDWCVKTAASAGRPIRWL
TELKIDGLAISLRYENGVLSSAATRGDGRVGEDVTGNALQVAGIPQRLSGTGHPPLVEVR
GEVFIPVAAFDELNALQARLRERVVAESLARGGDEEKATRSAARRFPAFANPRNAASGGL
RQQLEKKSGLELEAGRARLQSLRLFVHGIGAWPAPPVSSQSEVYGLLAEWGLPTSPYFRT
SDDIDGVLEFVTEYGEHRHTVEHEIDGVVVKVDELALHDELGATSRAPRWAIAYKYPPEQ
VNTKLLDIVVSVGRTGRATPFAVMAPARVAGSVVRQATLHNQEVVKAKGVLIGDTVVLRK
AGDVIPEVLGPVVELRDGSERAFVMPTECPECGFPLSPAKAGDIDLRCPNTRACPAQVRG
RVEHIGSRGALDIEALGEVTAAALTQPSVPEQPPLETEAGLFDLTLEQLVPIEVIVRDTE
TGEPRVDEKTGDPVRRAPFRRNPSAAEKKAGATGPQPSAQAVTLLEELEKAKTKELWRFL
VALNIRHVGPVAARALAQWFGSVDAIRAASRDELAAVEGVGGIIADAVTDWFAVDWHREI
VERWTAAGAQLTTPGHPGPGAAAGGGGVLDGVTVVATGSLEGYTREGAQEAILRAGGKAA
SSVSKKTDFVAAGPGAGSKLGKAEELGVRIIDAAQFHVLVTEGPAALDAIAPDAG
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaacggtgaccaactccccgacctgaccctcgacgaggcgcgcaccgaggcggca
gacctcaccacgcgcatcctcgacgcccgcgaggcctattacggacgtgacgccgagctc
gtcgacgacgccacctacgacgagtggatgcgtcggctcgagcagatcgagcggctccac
cccgaactccaggggcaggacagcccgacgcagtcggtgggcgctgccgagagcacgatg
ttcgcgccggtcgagcatgccgagcggatgctgagcctggacaacgtgttcagctccgac
gaactgcgtgattggtgcgtcaagaccgccgcctccgccggccggccgatccgctggctc
accgaactcaagatcgacggcctcgcgatcagcctgcgctacgagaacggcgtcctctcc
tcggccgccacccggggcgacgggcgggtgggcgaggacgtcacggggaacgcgctgcag
gtggctggcatcccgcagcgcctgtccggtacgggccatccgcccctcgtggaggtgcgc
ggcgaggtgttcatcccggtggcggccttcgatgagctcaacgcactccaggcgcgcctg
cgcgaacgcgtcgtcgcggagtccctcgcccgcggcggcgacgaggagaaggcgacccgc
agcgccgcccggaggttccccgccttcgcgaacccgcgcaacgccgccagcggcggactg
cggcagcagctggagaagaagagcggactggaactggaggccgggcgggcccgcctgcag
tcactgcgccttttcgtgcacgggatcggcgcgtggccggcgcccccggtgtcatcgcag
agcgaggtgtacggtctgctggcggagtggggactgcccacgagcccctacttccgcaca
tccgacgacatcgacggcgtgctggagttcgtgaccgaatacggcgagcaccgccacacc
gtcgagcatgagatcgacggcgtcgtggtgaaggtcgacgagctggcgctgcacgacgag
ctgggcgccaccagtcgcgcgccgcgctgggcgatcgcgtacaagtacccgcccgagcag
gtcaacacgaagctcctggacatcgtcgtctcggtcggccgcaccggccgggcgacgccg
ttcgccgtgatggcccccgcccgggtcgccggcagcgtcgtgcgccaggccacgctgcac
aaccaggaggtcgtcaaggccaagggagtgctcatcggcgacaccgtggtgcttcggaag
gccggtgatgtcatcccagaggtgctcggcccggtcgtggagctgcgggacggcagcgaa
cgcgccttcgtcatgcccaccgagtgcccggaatgcggattcccgctgagcccggcgaaa
gcgggagacatcgacctgcgttgccccaacacgcgggcatgccccgctcaggtgcgcggg
cgggtggagcacatcggctcgcgcggcgcgctcgacatcgaggcgctcggtgaggtgaca
gcggccgccctgacccagccgagcgtgcccgagcagcctccgctggagaccgaggccgga
ctgttcgacctcacgctcgagcagctcgtgccgatcgaggtgatcgtccgcgacaccgag
accggcgagccgcgtgtcgatgagaagaccggcgatcccgtgcggcgggcgcccttccga
cgcaatcccagtgccgcggagaagaaggccggcgcgaccggcccgcagccgtcggcgcag
gcggtgacactgctggaggagctggagaaggccaagaccaaggagctgtggcgctttctc
gtggcgctgaacatccgtcacgtcggccccgtcgctgcgcgcgccctcgcccagtggttc
gggtcggtcgatgccatccgcgcagcctcgcgggacgagctcgccgccgtggagggcgtg
ggcggcatcatcgcggatgcggtgaccgactggttcgcggtggactggcaccgggagatc
gtcgagcgctggactgcggccggcgcgcaactgacaacgcccggccaccccgggcccggg
gccgcggccgggggcggcggggtcctcgacggggtcacagtggtcgccactggctcgctc
gaggggtatacgcgcgagggtgcccaggaggcgatcctccgcgccggcggcaaggcggca
tcgagcgtgtcgaagaagaccgacttcgtcgccgccggaccgggcgccggatccaagctc
ggcaaggccgaagaactgggcgtgcgcatcatcgacgccgcgcagttccacgtgctcgtg
acggagggtcctgccgcgctcgacgcgatcgcgccggacgcgggatga
DBGET
integrated database retrieval system
