Mucilaginibacter mali: HQ865_05895
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Entry
HQ865_05895 CDS
T07211
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmab
Mucilaginibacter mali
Pathway
mmab03030
DNA replication
mmab03410
Base excision repair
mmab03420
Nucleotide excision repair
mmab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HQ865_05895 (ligA)
03410 Base excision repair
HQ865_05895 (ligA)
03420 Nucleotide excision repair
HQ865_05895 (ligA)
03430 Mismatch repair
HQ865_05895 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmab03032
]
HQ865_05895 (ligA)
03400 DNA repair and recombination proteins [BR:
mmab03400
]
HQ865_05895 (ligA)
Enzymes [BR:
mmab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HQ865_05895 (ligA)
DNA replication proteins [BR:
mmab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HQ865_05895 (ligA)
DNA repair and recombination proteins [BR:
mmab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HQ865_05895 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HQ865_05895 (ligA)
MMR (mismatch excision repair)
DNA ligase
HQ865_05895 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HQ865_05895 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
5_3_exonuc
RNA_ligase
HARP
zf-NADH-PPase
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QKJ29306
UniProt:
A0A7D4PZY4
LinkDB
All DBs
Position
complement(1362174..1364186)
Genome browser
AA seq
670 aa
AA seq
DB search
MSPVEAQKRIEELSAELRQHTYNYYVLAMPVISDFEFDKKLEELAGLEQQFPEFLSPDSP
TQKVGGDITKEFQTVRHRWPMLSLGNTYNTQELTDFDQRIRKAIGDNFEYVCELKFDGLS
MSLTYHNGELLRAVTRGDGVQGDDVTANVRTIHSVPKKLKPGNYPDEFEIRGEVFMHLKA
FERLNNERVENGEVPYANPRNFASGTVKLQDSTEVAKRPLDCFLYFLYTEKQVFKTHWES
LQAVKDWGFHVNDHNKLCKNLDEVLEFIARWDKDRYGLSYDIDGIVIKVNNYSQQQELGF
TAKSPRWAISYKFKAERVETELLAVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAD
EITERLKLHEHDTVYVEKGGEIIPKIISVNLDKRQPGAAPIQYVTHCPVCGTLLERKEGE
AASYCPNDEGCAPQITGKMQHFIGRKAMNIDGLGDETINTLYTKGFIGHIADLYDLYKRA
DELKQMDRFGEQSINNMLDGIEKSKQMPFEKVLFGLGIRYVGETVAKKLVAHFKTIDNLM
AASLEELTTTDEIGERIAQSLIEYFADPQHREQIEKLRAHGLQLVADDKPVELASDKLAG
KSFIISGTFEMSRDELKDIIEANGGKILGSISAKLNYLVAGDNMGPAKLEKATKLNIPII
SDQELMEMIG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccagttgaagcccaaaaacgtattgaagaattatcggccgagttaagacagcac
acttataactactatgtgctggccatgcccgttatatccgactttgaatttgataaaaaa
ttagaagaacttgccggtttagagcagcaattccccgagtttttatcgccagattcgcct
acgcaaaaggtgggcggcgatatcaccaaggagttccagacggtgcgccatcgctggcca
atgctgtcgctgggcaatacctacaacacacaggagctgaccgattttgatcagcgcatc
cgcaaggccattggcgataattttgaatacgtgtgcgaattgaagtttgatggcctgagc
atgagccttacctatcacaatggcgaattactgcgcgccgttacccgtggcgatggtgtt
cagggtgatgacgtaacggccaacgtccgcacaatacacagcgtgcctaaaaagctgaaa
cccggcaattaccccgacgagtttgagatccggggtgaggtatttatgcacctgaaggcc
tttgagcggctgaataacgaacgcgtagagaacggcgaagtaccttatgccaacccgcgc
aattttgcgtcgggcacggtaaaactgcaggacagtaccgaggtagccaaacgcccactg
gattgctttctctactttctgtataccgaaaagcaggtatttaaaacacactgggaaagc
ctgcaggcagttaaggactggggtttccatgtgaacgaccataacaagctttgcaaaaac
cttgacgaggtgctggagtttattgcccgctgggataaggaccgttacggcctgagctac
gatattgacggcattgtgatcaaggtaaacaactacagccagcagcaggaattgggattc
acagccaaatcgccgcgctgggctatatcctataaatttaaagccgaacgggtagagact
gaattactggcggtgacctaccaggttggtcgcaccggggcagttacgcctgtggccaac
ttaaaaccggtgttactggccggcaccaccgttaaacgcgctaccctgcacaatgccgat
gagataaccgaacgcctgaaactgcacgagcatgataccgtgtatgtagagaagggcggc
gaaattatcccgaagatcatcagcgttaatttggataagcgccaacctggcgctgcgcct
atacaatatgtaacacattgcccggtttgcggcacattgcttgagcgtaaagagggcgaa
gcggcctcgtactgccctaatgatgagggctgcgccccgcagatcaccgggaagatgcag
cactttatcggtcgcaaagccatgaacattgatgggcttggcgatgagaccattaatact
ttatatacaaaaggcttcatcggccacattgccgatctgtacgacctatataaacgtgcg
gacgaattaaagcagatggaccgcttcggcgagcaatccatcaataacatgctggatggt
attgaaaaatccaagcagatgccttttgagaaggtgcttttcggtttggggatccgatac
gtaggcgaaaccgtagctaaaaaactggtagcgcattttaaaaccatcgataatttgatg
gccgcatcacttgaagaactgaccactaccgatgaaataggcgaacgcattgcccaaagc
ctgatcgaatactttgccgacccgcagcaccgtgagcagatagaaaaactgcgcgcccat
ggcctgcaattggttgccgatgataaacctgttgaactggccagcgataaactggcgggc
aaaagcttcatcatatcgggcacgttcgaaatgtcgcgcgatgagttgaaggatattatt
gaagccaacggcggtaagatattgggcagcatatcggctaaactgaactacctggtagct
ggtgataatatggggccggcgaagctggagaaagccactaaactgaatatccctattatt
agcgatcaggagttgatggagatgatcggataa
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integrated database retrieval system
