Methylocaldum marinum: sS8_2610 Help Entry sS8_2610          CDS       T05638                                  Name (GenBank) NAD-dependent DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism mmai  Methylocaldum marinum Pathway mmai03030   DNA replication mmai03410   Base excision repair mmai03420   Nucleotide excision repair mmai03430   Mismatch repair Brite KEGG Orthology (KO) [BR:mmai00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     sS8_2610    03410 Base excision repair     sS8_2610    03420 Nucleotide excision repair     sS8_2610    03430 Mismatch repair     sS8_2610  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:mmai03032]     sS8_2610    03400 DNA repair and recombination proteins [BR:mmai03400]     sS8_2610 Enzymes [BR:mmai01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      sS8_2610 DNA replication proteins [BR:mmai03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      sS8_2610 DNA repair and recombination proteins [BR:mmai03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      sS8_2610    NER (nucleotide excision repair)     GGR (global genome repair) factors      sS8_2610    MMR (mismatch excision repair)     DNA ligase      sS8_2610   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       sS8_2610 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT Nlig-Ia DNA_ligase_ZBD HHH PTCB-BRCT RNA_pol_A_CTD SEN2-like_N 5_3_exonuc BRCT_2 DNA_pol_lambd_f Zn_ribbon_NUD DUF4796_N Zn_ribbon_PF0610 Motif Other DBs NCBI-ProteinID:  BBA34558 UniProt:  A0A250KSD9 LinkDB All DBs Position 2882136..2884148 Genome browser AA seq 670 aa AA seqDB search MNTPEEIKRRADDLRKDIEFHNQRYYQLDSPLISDAEYDRLMQELLAIERQYPELATPDS PTQRVGAPPVAAFAAVRHEIPMLSLDNAFSDEDVEDFHRRVCQRLERNDIGYLVEPKLDG LAVSLVYDKGVLVCGATRGDGQTGEDISHNVRTIRDIPLRLAGEGWPDRLEVRGEVFMSK QGFLALNERARQNGDKVFVNPRNAAAGSLRQLDAKITASRPLRFYAYGYGVFPGDQLPET QKELMDRFKSWGIPVNPELHVVRGVAGCLAYFKDLLARRHDLPYEIDGVVYKVDRLADRR VLGFVARAPRWAIAHKFPAEEATTKVIAIEVQVGRTGAMTPVARLEPVFVGGVTVTNATL HNADEVHRRDVRAGDTVVVRRAGDVIPEVVKSLPELRPADAQVFQMPSRCPVCGSEVELE PGEAIARCSGGLFCAAQHRESIKHFASRRAMDIDGLGDKLVDQILEKGLIETVADLFHLD VERLAALERMGRKSAENLINALERSKHTTLPRFLYALGIREVGEVTAQTLAQHFRTLDKI MAADEEALQKVPDIGPSVAHHIYTFFRQPHNVEVVQALLAAGVHWDEIAEVKTDQPLQGR TFVITGTLSAMSRDEAKARLQALGGKVTGSVSKNTSYVIAGADPGSKLTKAEELGVEVLD EAAFLRLIET NT seq 2013 nt NT seq  +upstreamnt  +downstreamnt gtgaacactccggaagagatcaaacgccgcgcggatgacttgcgcaaggacatcgaattt cacaaccagcgctattatcagctcgattcgccgctgatttcggatgccgagtacgaccgt ctaatgcaggaactgctggcgatcgagcggcaatatccggaactcgcgacaccggactcc ccgacccagcgggtcggcgctccaccggtcgcagcgtttgccgcggtacgccatgaaatc cccatgctgtcgttggacaatgccttcagcgacgaggacgtcgaggatttccaccgccgc gtgtgccagcggctcgaacgcaacgacatcggctatctggtggagcccaagctcgacggt ctcgcggtgagcctcgtttacgacaagggcgtcctggtgtgcggggcgacgcgcggcgac ggccagaccggcgaggacatttcccacaatgtccgcaccatacgcgacattcccttgcgc ctcgctggcgagggctggccggaccgactggaagtcagaggcgaagtgttcatgtcgaaa cagggcttcctcgccctgaatgagcgggcacgccaaaacggcgacaaggttttcgtcaac ccgcgcaatgccgccgccggaagtctccggcaactcgacgccaagatcaccgcctcgcgc ccgctccggttttacgcatacggctatggcgtgtttcccggtgaccaactgccggaaacc caaaaggagctgatggaccgcttcaagtcctggggcataccggtcaacccggaactgcac gtggtccggggcgtagccggctgtctcgcgtatttcaaggatcttctggcccggcggcac gatctcccgtacgagatcgacggcgtggtgtacaaggtcgaccggctcgccgaccggcgc gtgctgggcttcgtcgcccgcgcgccgcgctgggctatcgcccacaaatttccggccgag gaagccaccaccaaggtcatcgccatcgaggttcaagtggggcgcaccggtgctatgact ccggtggcacggctggaaccggttttcgtgggcggcgtgaccgtgaccaatgcgaccctg cacaacgcggacgaagtgcatcggcgcgacgttcgggccggcgatacggtagtcgttcgc cgcgccggcgatgtgatcccggaagtggtgaaaagcctgccggaacttcgcccggccgat gcgcaggtcttccagatgccgagccggtgtcccgtgtgcggctcggaagtggaactggag cctggcgaagccatcgcccgttgcagcggcggcctgttctgtgccgcgcaacacagggaa tcgatcaagcatttcgcgtcgcgccgcgccatggacatcgacggcctgggagacaagctg gtcgatcagattctcgaaaaggggttaatcgaaaccgtcgccgatctctttcacctcgac gtcgaacggctcgcggcactggagcggatgggacggaaatcggcggagaatctgatcaat gccctggaaaggagcaaacacaccactctgccccgcttcctttacgctctgggcatccgc gaagtcggcgaagtcaccgcgcaaacactggcccagcatttccggacactcgacaagatc atggccgcggacgaggaagcactgcagaaagtgccggacataggcccgtccgtggcccat cacatctacacattcttccggcagccgcataatgtcgaggtcgttcaggcactactcgcc gccggagtgcattgggacgaaatcgcggaggtgaaaaccgaccagccgttgcagggccga accttcgtcatcaccggcacgctctccgccatgtcccgcgacgaagcgaaagcccggctt caggctctcgggggcaaggtcaccggtagcgtgtccaaaaacaccagctacgtgatcgcc ggtgccgaccccggctcgaagctgaccaaggccgaggaactcggggttgaagtattggat gaagcggcttttttgcgcttgatcgaaacctga

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