Mycobacterium marseillense: CKJ54_17510
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Entry
CKJ54_17510 CDS
T05049
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmal
Mycobacterium marseillense
Pathway
mmal03030
DNA replication
mmal03410
Base excision repair
mmal03420
Nucleotide excision repair
mmal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKJ54_17510
03410 Base excision repair
CKJ54_17510
03420 Nucleotide excision repair
CKJ54_17510
03430 Mismatch repair
CKJ54_17510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmal03032
]
CKJ54_17510
03400 DNA repair and recombination proteins [BR:
mmal03400
]
CKJ54_17510
Enzymes [BR:
mmal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CKJ54_17510
DNA replication proteins [BR:
mmal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CKJ54_17510
DNA repair and recombination proteins [BR:
mmal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CKJ54_17510
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKJ54_17510
MMR (mismatch excision repair)
DNA ligase
CKJ54_17510
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKJ54_17510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ASW91467
UniProt:
A0AAC9VX23
LinkDB
All DBs
Position
complement(3781358..3783439)
Genome browser
AA seq
693 aa
AA seq
DB search
MSSAEADSVAPEVRRQWQDLAESVREHQFRYYIKDAPIISDAEFDTMFNELLALEERHPE
LRVADSPTQLVGGAGFATDFAEAQHLERMLSLDDVFDRDELVAWSNRVENEVGKEPHYLC
ELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSADKHFPAPALLE
VRGEVFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRRLRMICHGIGR
TEGFAPKTQHEAYAALKAWGLPVAEQTARVRGLAAVEDRIAYWGEHRYDLEHEIDGVVVK
VDDVALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG
STVGLATLHNAAEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPE
CGTTLAPAKEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIEGLGYEAAIALLKAEVIA
DEGDLFTLTEDDLLRTELFRTKAGALSANGKRLLDNLGKAKKVALWRILVALSIRHVGPT
AARALATEFGDLDAIMSASTERLAAVEGVGPTIAAALTEWFTVDWHRAIVDKWRAAGVRM
ADERDTSVPRTLEGLTVVVTGSLAGFSRDDAKEAILARGGKAAGSVSKKTDYVVAGDSPG
SKYDKAVELGVPVLDEDGFRQLLADGPSETPAE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcagcagaagctgattcggtagcgcccgaggttcggcggcagtggcaggacctg
gccgaatcggtccgtgaacaccagtttcgctactacatcaaggacgcgccgatcatctcg
gacgccgaattcgacacgatgttcaacgagctcctcgcgctggaggagcgccaccccgag
ctgcgggtcgccgattcgccgacccagctggtcggcggggcgggcttcgccaccgacttc
gccgaggcgcagcacctggaacggatgctgagcctcgacgacgtcttcgaccgcgacgag
ctcgtcgcctggagcaatcgcgtcgagaacgaggtcggcaaggagccccattacctgtgc
gaactcaagatcgacggggtggcgctgtcactggtgtaccgcgacggtcggctggaacgc
gccgcgacccgcggcgacggccgcgtcggcgaggacgtgacgctcaacgcgcgcaccatc
gacgacgtgcccgagcggctgtcggccgacaagcacttcccggcgccggccctgctcgag
gtgcgcggcgaggtgttcttcctgctcgccgacttcgaggcgctcaacgccagcttggtc
gaggacggcaaggcgccgttcgccaatccccgcaacagcgccgccggctcgctgcgccag
aagaatccggccgtcaccgcccggcgcaggctgcggatgatctgtcacggcatcggccgc
acggaagggttcgcgccgaagacccagcacgaggcctacgccgcgctgaaggcctggggc
ctgccggtggccgaacaaacggcacgcgtgcgcggcctggctgcggtcgaggatcggatc
gcctactggggcgagcaccgctacgacctcgaacacgaaatcgacggcgtggtggtcaaa
gtcgacgacgtcgcgttgcagcgccggctcgggaccacgtcgcgcgcgccgcgctgggcg
gtcgcctacaagtacccgccccaggaggcgcagaccaaactgctcgacatccgcgtcaac
gtcgggcgcaccgggcgcgtcacgccgtttgcattcatgacgccggtcaaggtggccggg
tcgacggtcgggctggccaccctgcacaacgccgccgaggtcaaacgcaagggcgtgctg
atcggcgacaccgtgatgatccgcaaagccggcgatgtcatcccggaggtgctagggccc
gtcgtcgacctgcgcgacggctccgagcgcgaattcgtcatgcccacaacgtgtcccgaa
tgcggcaccacgctggcaccggccaaggagggcgacgctgacatccgctgccccaacgcc
cggtcctgtccggcgcagctgcgggagcgcgtgttccacgtcgccggtcgcggggcgttc
gacatcgaggggctcggctacgaggccgccatcgccctgctcaaggcggaggtgatcgcc
gacgagggcgacctgttcaccctgaccgaggacgacctgctacgcaccgagcttttccgg
acgaaggcgggcgcgttgtctgccaacggcaaacggctgctcgacaacctcggcaaggcc
aaaaaggttgcgctgtggcggattttggtggcgttgtccatccggcacgtcgggccgacg
gcggcgcgcgccctggcgaccgaattcggcgacctggacgccatcatgtccgcctccacc
gagcggctcgccgcggtcgagggggtgggcccgacgatcgccgcggcactcaccgaatgg
ttcaccgtcgactggcaccgggcgatcgtcgacaagtggcgcgccgccggcgtgcggatg
gccgatgagcgcgacaccagcgtgccgcgcacgctcgaggggttgacggtagtggtcacc
gggtcgctggccggcttttcccgcgacgacgccaaggaggcgatcctggcacgcggcggc
aaggccgccgggtcggtgtccaagaagaccgactacgtggtggccggggattcaccaggg
tcgaaatacgacaaggccgtcgagctgggggtgcccgtccttgacgaggacggcttccgg
cagttgctcgccgatgggccgtccgaaactccggcggaataa
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