Mycobacterium malmoense: K3U93_07480
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Entry
K3U93_07480 CDS
T07571
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmam
Mycobacterium malmoense
Pathway
mmam03030
DNA replication
mmam03410
Base excision repair
mmam03420
Nucleotide excision repair
mmam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K3U93_07480 (ligA)
03410 Base excision repair
K3U93_07480 (ligA)
03420 Nucleotide excision repair
K3U93_07480 (ligA)
03430 Mismatch repair
K3U93_07480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmam03032
]
K3U93_07480 (ligA)
03400 DNA repair and recombination proteins [BR:
mmam03400
]
K3U93_07480 (ligA)
Enzymes [BR:
mmam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K3U93_07480 (ligA)
DNA replication proteins [BR:
mmam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K3U93_07480 (ligA)
DNA repair and recombination proteins [BR:
mmam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K3U93_07480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K3U93_07480 (ligA)
MMR (mismatch excision repair)
DNA ligase
K3U93_07480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K3U93_07480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Auto_anti-p27
Cuticle_1
UPF0758_N
BRCT_2
HHH_8
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QZA18974
LinkDB
All DBs
Position
1582788..1584872
Genome browser
AA seq
694 aa
AA seq
DB search
MSSPEVDPVAPEIRRQWRELADEVREHQFRYYVRDAPIISDAEFDQLLRRLEALEEQYPE
LRTPDSPTQLVGGAGFATDFAEAEHLERMLSLDNAFSTEEFDQWAARIHAEAGKDVPYLC
ELKIDGVGLSLVYRGGRLVRAATRGDGRTGEDVTLNARTIDDVPERLTATDSYPIPDVLE
VRGEVFFRLPDFEALNASLVEDGKTPFANPRNSAAGSLRQKDPAVTARRKLRMICHGLGY
TEGFRPATLHDAYLALGAWGLPVSEHTTRVKDVAGAHERIRYWGEHRHDVDHEIDGVVVK
VDDVALQRRLGSTSRAPRWAIAYKYPPQEVQTKLLDIRVNVGRTGRVTPFACMTPVKVAG
STVGLATLHNAAEVTRKGVLIGDTVMIRKAGDVIPEVLGPIVDLRDGSEREFVMSTTCPE
CGTPLAPAKEGDVDIRCPNARSCPAQLRERVFHVAGRGALDIEGLGYEAAIALLHAGVIV
DEGDLFSLTEDELLRTELFSTKSGALSANGKRLLANLDKAKAVPLWRVLVALSIRHVGPT
AARALAIEFGSLDAIRSASTEQLAAIEGVGPTIAAAVTEWFTVDWHRAIVDKWRAAGVRM
ADERDASVPRTLVGLTVVVTGSLTSFSRDDAKEAIVARGGKAAGSVSKKTDYVVVGDSPG
SKYEKAVKLGVPVLDEDGFRRLLAEGPPVEVAPG
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgagttcgccagaagttgaccccgttgcgcccgagattcggcggcagtggcgtgaactg
gccgacgaggtgcgcgaacatcagttccgctactacgtgcgcgatgcgcccatcatctcc
gacgcggagttcgaccagctgttgcgtcggctcgaagccctcgaggagcagtatccggag
ctgcgcacgcccgattcgccgacgcaactcgtcggcggcgccgggttcgccaccgacttt
gccgaggccgagcacctcgagcggatgctgtcgctggacaacgcgttcagcaccgaagag
ttcgaccagtgggcggcccgcatccacgccgaggccggcaaggacgttccttatctgtgt
gagctgaagatcgacggcgtcggcctgtcgttggtgtaccgcggcgggcgtctggtgcgg
gcggcgacccggggcgacgggcgcaccggcgaggacgtcacgttgaacgcgcgcaccatc
gacgacgtcccggagcggctgacggccaccgattcctacccgatacccgacgtcctcgag
gtgcgcggtgaggtgttcttccggctgcccgatttcgaggcgcttaacgcaagcctcgtc
gaggacggcaagacgccgttcgccaacccccgcaacagcgccgcggggtcgcttcggcag
aaggatccggcggtcaccgcccgccgcaagctccggatgatctgccacgggctgggatac
accgagggattccggccggccacgctgcacgacgcgtacctcgcgctgggggcctggggc
ttgcccgtctccgagcacaccactcgggtcaaagacgtggccggcgcgcacgagcgcatc
cggtattggggcgagcaccgccacgacgtcgaccacgaaatcgacggcgtcgtcgtcaaa
gttgacgacgtggcgttgcagcgcaggctgggatccacctcgcgggcgccgcggtgggcg
atcgcctacaagtacccgcctcaggaggtgcagaccaagctcctcgacatccgggtcaac
gtcggaaggaccgggcgcgtcacgcctttcgcgtgcatgacgccggtaaaggtcgccggc
tcgacggtgggactggccaccctgcacaacgccgccgaggtcacgcgcaagggggtgctg
atcggcgacaccgtgatgatccgcaaggccggtgacgtgattccggaagtgctcggtccc
atcgtggacctgcgcgacggctcggaacgcgaattcgtcatgtccacaacgtgtcccgaa
tgcggtaccccgctcgctcccgcgaaggagggcgatgtcgacatccgctgtcccaatgcc
cggtcgtgcccggcgcagttgcgggagcgcgtttttcacgtcgccggtcgcggtgcgctc
gacatcgagggcctgggttatgaggccgccatcgcgctgctgcacgccggggtgatcgtc
gacgagggggacctgttctccctcaccgaggacgagctgttgcgcaccgagttgttctcc
accaagagcggcgcgctgtcggccaacggcaagcggctgctggccaacctcgacaaggcc
aaggccgtgccgctgtggcgggtgctggtggcgttgtcgatccggcacgtcgggccgacg
gccgcccgggccctggcgatcgagttcggcagcctggacgcgatcaggtcggcgtcgacc
gagcagctggccgcgatcgagggcgtgggcccgacgatcgccgccgcggtcaccgagtgg
ttcacggtggactggcaccgcgcgatcgtcgacaagtggcgagcggccggcgtgcggatg
gccgacgagcgcgacgccagtgtgccgcgcacgttggtggggctgaccgtcgtggtcacc
ggttcgctgacgagtttttcccgcgacgacgccaaggaggcgatcgtggcgcgcggcggc
aaggccgcgggttcggtgtcgaagaagactgactacgtcgtcgtcggtgactcgccgggc
tcgaaatacgagaaagcggtgaagctgggggtaccggtcctcgacgaagacgggtttcgg
cggttactcgcggagggcccgcccgtggaggtggcgcccgggtag
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integrated database retrieval system
