Mycolicibacterium mageritense: MMAGJ_53340
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Entry
MMAGJ_53340 CDS
T07395
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmat
Mycolicibacterium mageritense
Pathway
mmat03030
DNA replication
mmat03410
Base excision repair
mmat03420
Nucleotide excision repair
mmat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MMAGJ_53340 (ligA)
03410 Base excision repair
MMAGJ_53340 (ligA)
03420 Nucleotide excision repair
MMAGJ_53340 (ligA)
03430 Mismatch repair
MMAGJ_53340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmat03032
]
MMAGJ_53340 (ligA)
03400 DNA repair and recombination proteins [BR:
mmat03400
]
MMAGJ_53340 (ligA)
Enzymes [BR:
mmat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MMAGJ_53340 (ligA)
DNA replication proteins [BR:
mmat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MMAGJ_53340 (ligA)
DNA repair and recombination proteins [BR:
mmat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MMAGJ_53340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MMAGJ_53340 (ligA)
MMR (mismatch excision repair)
DNA ligase
MMAGJ_53340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MMAGJ_53340 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
HHH_3
AziU2_like
Motif
Other DBs
NCBI-ProteinID:
BBX36052
UniProt:
A0ABM7HZM3
LinkDB
All DBs
Position
5447757..5449868
Genome browser
AA seq
703 aa
AA seq
DB search
MPVGALGYPAGVTSSDVEDADLRRRWQELADQVREHQFRYYVRDAPIISDAEFDTMLRQL
QALEEAHPELLTPDSPTQLVGGAGFATDFTPAEHLERMLSLDNVFDSDELSAWAARISGE
TGDAAHYLCELKIDGVALALVYRNGRLERAATRGDGRVGEDVTLNARTIDDIPERLTPSD
EFPIPAVLEVRGEVFFRVADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKL
RMICHGLGRMEGDGGSSFKTLHDAYRALGQWGLPVSTHTTRVSGVAAVAERIAYWGEHRH
DVDHEIDGLVVKVDEVALQRRLGSTSRAPRWAVAYKYPPEEATTKLLDIRVSVGRTGRVT
PFAYMEPVKVAGSTVGLATLHNATEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGT
EREFVMPTNCPECGTRLAPAKEGDADIRCPNTRSCPAQLRERVFHVAGRGAFDIEGLGYE
AATALLAGGVITDEGDLFTLTAEDLLRTELFTTKAGELSANGKRLLANLGKAKAQPLWRV
LVALSIRHVGPTAARALATEFGSLDAIVEASEEQLAAVEGVGPTIAAAVVEWFTVDWHRA
IVDKWRAAGVRMADERDATVERTLEGLSIVVTGSLPGFSRDEAKEAIIARGGKAASSVSK
KTAFVVAGDAPGSKYDKAVELGVPILDEDGFRQLLAEGPPAAD
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgtcggtgccctcggctaccctgcgggggtgacctcgagcgacgtggaagacgct
gacctgcggcgacgttggcaagaactggccgaccaggtgcgtgaacaccagttccgctac
tacgtgagggacgcgccgatcatctccgacgcggagttcgacacgatgctgcgccaactg
caggcgctcgaagaggcccatcccgaactgttgacgccggattctccgacccagctggtg
gggggcgcgggcttcgcgaccgacttcacgcccgccgagcacctcgaacgcatgctgtca
ctggacaacgtgttcgactccgacgagttgtcggcgtgggcggccaggatcagtggtgag
acgggcgacgccgcgcactatctgtgcgagctcaagatcgacggcgtcgcgctcgcactc
gtctaccgcaacggccggttggagcgcgccgcgacccgcggcgacgggcgcgtcggcgag
gacgtcacgctcaacgcccgcaccatcgacgacatccccgagcgcctcaccccctccgac
gaattccccatacccgccgtgctggaagtgcgcggtgaggtgttcttccgggtcgccgac
ttcgaggagctcaacgccggactggtcgccgagggcaaaccgcccttcgccaatccgcgc
aacagtgcggcgggctcgctgcggcagaagaacccggcggtgacggcccggcgcaagttg
cggatgatctgccacgggttgggacggatggaaggcgacggcggatcgagcttcaagacc
ctgcacgacgcgtaccgcgcgctggggcagtgggggctgccggtgtcgacgcacaccacc
agggtgtccggggtcgccgcggtcgccgagcggatcgcgtactggggcgagcaccgtcac
gacgtcgaccacgaaatcgacggacttgtggtcaaagtcgacgaggtggccctacaacgc
aggctgggttcgacgtcgcgtgccccgcgctgggcggtggcctacaagtatccgcccgag
gaggccaccaccaagctgctcgacatcagggtcagtgtgggccgcaccggtcgggtcacg
ccgttcgcctacatggaaccggtcaaggtggccggatcgacggtcggcctcgcgaccctg
cacaacgccaccgaggtcaagcgcaagggtgtgctcatcggcgacaccgtcgtgatccgc
aaggccggcgatgtcatccccgaggtgctcggccctgtcgtggacctcagggacgggacc
gaacgtgaattcgtcatgcccacaaactgtcccgaatgcggcacccgcctggcaccggcg
aaagagggcgatgccgacatccgttgccccaacaccaggagctgcccggcgcagttgcgg
gagcgcgtgtttcacgtcgcgggccggggcgcgttcgacatcgaggggttggggtacgag
gccgcgacggcgctgctggccggcggggtgatcaccgacgagggcgatctgttcaccctg
accgccgaggatctcttgcgcaccgagctgttcactaccaaggccggcgagttgtccgcg
aacggcaagcgcctgctggccaacctcggcaaggccaaggcccaaccgctgtggcgggtt
ctggtcgcgttgtccatccgccacgtcgggcctaccgcggcgcgggccctggccaccgag
ttcggcagcctggacgccatcgtcgaggcgtcggaggaacaactcgccgcggtcgagggg
gtcgggccgaccatcgccgcggcggtggtggagtggttcaccgtcgactggcaccgcgcg
atcgtcgacaagtggcgtgccgcgggcgtacggatggccgacgaacgcgacgcgaccgtc
gagcgcacgctggaaggcctgtcgatcgtggtcaccgggtcgctgcccggattctcgcgc
gacgaggccaaggaggccatcatcgcccggggtggcaaagccgcgagctcggtgtccaag
aagacggcgttcgtggtggcgggcgacgcccccggatcgaaatacgacaaggccgtggaa
ctgggcgtaccgattctcgacgaggacggtttccggcaactgctcgccgaggggccaccg
gccgcggactga
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