Marinomonas mediterranea: Marme_3195
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Entry
Marme_3195 CDS
T01449
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mme
Marinomonas mediterranea
Pathway
mme03030
DNA replication
mme03410
Base excision repair
mme03420
Nucleotide excision repair
mme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Marme_3195
03410 Base excision repair
Marme_3195
03420 Nucleotide excision repair
Marme_3195
03430 Mismatch repair
Marme_3195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mme03032
]
Marme_3195
03400 DNA repair and recombination proteins [BR:
mme03400
]
Marme_3195
Enzymes [BR:
mme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Marme_3195
DNA replication proteins [BR:
mme03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Marme_3195
DNA repair and recombination proteins [BR:
mme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Marme_3195
NER (nucleotide excision repair)
GGR (global genome repair) factors
Marme_3195
MMR (mismatch excision repair)
DNA ligase
Marme_3195
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Marme_3195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_NUD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ADZ92412
UniProt:
F2K323
LinkDB
All DBs
Position
complement(3512660..3514702)
Genome browser
AA seq
680 aa
AA seq
DB search
MTDAQTPSLEYVKTLVSQLNDYSYSYHVKDDPKVPDSEYDRLYKALQLIELKNPQWIQPD
SPTQRVGEKPDTGFANVEHTVAMLSLDNAFDDDSMLEFNERVKKLLNESADIEFCCEPKL
DGLAISLRYEDGVLVRGVTRGDGLSGEDITSNIRTIHTVPLKLRTDTPPPVVEVRGEIYM
PKEGFEVLNALAKQKDEKLFVNPRNAAAGSLRQLDPKITASRPLVLCAYSIGFSEGWTQP
QSHYDGLIQLGDWGFKINDRMERVTGIQGCLSYYEKLNQDRPALTYDIDGIVYKVDSIAK
QQELGFIARAPRWAIARKFPAQEEITQIKGIDFQVGRTGAITPVARLEPVFVGGVTVSNA
TLHNKDEIARLGVRVNDWVIIRRAGDVIPQVVQVVLEKRPEGTVSVEYPDSCPVCGSHTE
QVEGEAVIRCAGGLVCNAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDNKLVQTPADIYK
LHEKEARLLDLERMGDKSVDKLLTSIDASKNTLFNRFIYALGIREVGEATAKALTKHYKA
LDALIQADQESLIQVSDVGPIVAQHVQRFFEQEQNIVVINELIELGIQWDAPAEAAGESE
QPLLGKTYVVTGTLNEFTREEIKEKLQQLGAKVSGSVSGKTDCLVAGEKAGSKLAKAQSL
NVPVLDEQGIIAFLKEQGAI
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgcccaaaccccaagtttagaatacgtgaagacactggtttctcagttaaat
gactatagttattcgtatcatgtaaaagacgatccaaaagtacctgattcggaatacgat
cggttatacaaagcgttgcagttgattgaactcaaaaatccacaatggattcagccagat
tctccaactcaacgtgtcggggaaaagccagacacaggctttgctaatgttgaacatacg
gtggctatgttgtctttggacaacgctttcgatgatgattccatgttggagtttaatgag
cgtgttaaaaagctcttaaatgagtccgccgatatcgagttttgctgtgaaccgaagctt
gacgggctggcgattagtttgcgatacgaggacggtgtacttgtacgaggtgttactcgc
ggtgatggcctttcgggcgaggacataacctctaacatacgtactattcatacggttcct
cttaaattacgtactgatacgccgccaccggtagtggaagttcgtggtgaaatctacatg
ccaaaagaggggttcgaagtactcaatgcgcttgcaaagcaaaaagatgaaaagctgttt
gtaaaccctcgaaatgcggctgcaggtagtttacgtcaactagaccctaaaataaccgca
tctcgtccgcttgttctatgtgcttattcaatcggatttagtgaaggttggactcagcct
cagagtcattatgatggactgattcaacttggtgattggggctttaagatcaatgaccgt
atggagcgcgtaacaggtattcaagggtgcctatcatattacgaaaagttgaaccaagat
cgccccgcgttaacctatgacatcgatggtattgtttacaaagtagatagtattgccaag
caacaggagcttggttttattgcaagagcgccacgatgggcaattgcacgcaaatttccc
gctcaagaagaaataacccaaattaaaggtattgactttcaagtggggcgaacaggggcg
atcacccccgttgctcgacttgagccggtttttgtcggtggtgttaccgtttcaaatgcg
acgttacacaacaaagatgaaatcgctcgtcttggggttcgggttaatgactgggttatt
atccgtcgtgcaggtgatgtcatcccccaagttgttcaagtggtattggaaaaacgtcct
gaaggtactgtttcggtggaatatccagattcttgtccggtttgtggttctcataccgag
caggttgaaggggaggcggttatacgttgtgctggtgggttggtttgcaatgcgcaatta
aaggaaagtctaaagcattttgtgtctcgtaaagccatggatattgacggtttaggggat
aaactgattgagcagcttgtagacaacaagctcgtacaaacgccagctgatatctataaa
ttgcatgaaaaagaagcgcgccttcttgatcttgaaaggatgggagacaagtcagtcgat
aaattgcttacctcgattgatgcgtcaaaaaacaccttgttcaatcgatttatctacgca
ttgggtattcgtgaagtgggtgaggcgaccgcgaaggcattgactaagcattacaaagcc
ttggatgctttgattcaagcagatcaagagtcccttatccaagtgtctgatgttggtcct
attgtagctcagcatgtacagcgattttttgagcaagagcagaatatcgtcgttataaat
gagctaattgaattaggcatacaatgggatgcgccagcagaagctgcaggtgaaagtgag
caaccacttctcggaaaaacatatgttgtaaccgggacgttaaacgagttcacaagagag
gaaatcaaagaaaagctacagcagcttggagcaaaagtcagtggttcggtatcaggcaaa
acggactgtttagtggcgggtgaaaaggcgggttctaagctggctaaggctcaatctctt
aatgtccctgttctagacgaacaagggattatcgctttcttaaaagaacagggagcaatt
tag
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integrated database retrieval system
