Martelella mediterranea: Mame_02487
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Entry
Mame_02487 CDS
T04757
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmed
Martelella mediterranea
Pathway
mmed03030
DNA replication
mmed03410
Base excision repair
mmed03420
Nucleotide excision repair
mmed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mame_02487 (ligA)
03410 Base excision repair
Mame_02487 (ligA)
03420 Nucleotide excision repair
Mame_02487 (ligA)
03430 Mismatch repair
Mame_02487 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmed03032
]
Mame_02487 (ligA)
03400 DNA repair and recombination proteins [BR:
mmed03400
]
Mame_02487 (ligA)
Enzymes [BR:
mmed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Mame_02487 (ligA)
DNA replication proteins [BR:
mmed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Mame_02487 (ligA)
DNA repair and recombination proteins [BR:
mmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Mame_02487 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mame_02487 (ligA)
MMR (mismatch excision repair)
DNA ligase
Mame_02487 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Mame_02487 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
MutL
DUF1192
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AQZ51814
UniProt:
A0A1U9Z2C1
LinkDB
All DBs
Position
2685350..2687497
Genome browser
AA seq
715 aa
AA seq
DB search
MAKKPVEELSRDEAEAELAHLAAEIARHDVAYHGKDAPEITDAEYDALKQRNDALEARFP
DLIRADSPSRRVGSTPSEAFAPVVHAVPMLSLGNVFSDEDVQDFIASVYRFLGQMPDGSI
AFTAEPKIDGLSMSLRYEDGVLVSGATRGDGATGENVTANVRTISEIPNRLPKGAPAVVE
VRGEIYMAKSDFAALNAALAEEGKPTYVNPRNTASGSLRQLDPQVTAKRKLRFFAYAWGE
MSEMPADTQMGMVETFGKWGFPVNPLMRRLSSVDDLIDHYREIGVERGDLDYDIDGVVYK
VDRLDLQARLGFRSRSPRWATAHKFPAEQAITRLLNIDIQVGRTGALTPVARLEPITVGG
VVVTNATLHNEDYIAGKGSGGEPIREGRDIRIGDYVIVQRAGDVIPQIVDIVPDKRPDDA
EPYQFPDHCPVCGAHAVREINEKTGKLDAVRRCTAGFSCRAQAVEHLKHFVSRNAFDIEG
LGSKQVDFFFEHEDEALAIRTAPDIFTLERRQGAALTKLENFNGWGKTSVANLYESINER
RTIALNRFIFALGIRHVGETTAKLLARSYGSYEAFEKAMREAASGEGEAWDDLNNIDGIG
AVVARAIAEFFAEENNTDVIARLLKEVTPEDDQQRIDTSSPVAGKTVVFTGTLEKMTRDE
AKAKAESLGAKVSGSVSKKTDIVIAGPGAGSKLKKAEELGVQTMDEDEWLALIGG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaaccggtcgaggaactgtcccgcgatgaagccgaggcggagcttgcgcat
ctggccgcggaaatcgcccgtcatgacgttgcctatcacggcaaggacgcgccggagatc
accgacgccgaatatgacgcgctgaagcagcgcaatgatgcgctggaagcgcggtttccc
gacctcattcgcgccgacagcccgtcgcgccgggtcggatcgacgccgtcggaggcgttt
gcgccggtggtgcatgccgtgccgatgctctcgctcggcaatgtgttttccgatgaggac
gtgcaggatttcatcgcctcggtctatcgctttctggggcagatgccggatggctcgatc
gcctttaccgccgaacccaagatcgacgggctgtcgatgtcgctgcgctatgaggacggc
gtgttggtctccggcgccacccgcggcgatggcgcgaccggcgaaaatgtcaccgccaat
gtccgcaccattagcgagatcccgaaccggttgccgaagggcgcgccggcggtggtcgag
gtgcgcggcgagatctacatggccaagagcgattttgccgcgctcaacgccgcgctcgcg
gaagaaggcaagcccacctatgtgaacccgcgcaacaccgcctccggctcgctgcgccag
ctcgacccgcaggtgacggcgaagcgcaagctgcgattcttcgcctatgcctggggcgag
atgtcggagatgccggccgatacccagatgggcatggtcgagaccttcgggaaatggggc
tttccggtcaatccgctgatgcggcggttatcctccgtcgatgacctgatcgatcattac
cgagagatcggcgtagagcgcggcgatctcgactatgatatcgatggcgtcgtctacaag
gtcgaccggctcgacctgcaggcacggctcggtttccgctcgcgttcgccgcgctgggcg
acggcgcacaagttcccggccgaacaggcgatcacccggcttctcaacattgatatccag
gtcggccgcaccggagcgttgacgccggtcgcgcggctggagccgatcacggtcggcggc
gtggtggtgaccaatgcgacgctgcacaacgaggactatatcgccggcaagggctccggc
ggcgagccgatccgcgagggccgcgatatccgcattggcgactatgtcatcgtccagcgc
gccggcgacgtcattccccagatcgtcgacatcgtgccggacaagaggcccgacgatgcc
gaaccctatcagtttcccgatcactgcccggtttgcggggcgcatgcggtgcgcgagatc
aacgaaaagaccggcaagctcgatgcggtgcggcgctgcacggcggggttctcctgccgg
gcgcaggcggtggagcacctgaagcatttcgtctcgcgcaatgccttcgatatagaaggg
ctcggctccaagcaggtcgatttcttcttcgaacatgaggacgaggcgctggcgatccgc
accgcgcccgacatcttcacgctggagcggcggcagggggcggcgctcaccaagctcgag
aatttcaacggttggggcaagacttcggtcgccaatctctacgagtcgatcaacgagcgt
cgcacgatcgccctcaaccgcttcatcttcgccctcggaatccgccatgtcggcgagacc
acggcaaagctgctggcgcgctcctacggctcctatgaggcctttgagaaagcgatgcgc
gaggcggccagcggcgagggcgaggcctgggacgatctcaacaatatcgacggcatcggc
gctgtcgtcgcccgcgccatcgccgaattcttcgccgaggagaacaataccgatgtcatc
gcccgcctgctcaaggaggtgaccccggaggacgaccagcagcgcatcgacacctcaagc
ccggtcgccggcaagacggtggtgttcaccggcacgcttgagaaaatgacgcgcgacgag
gcgaaggccaaggccgaaagcttgggcgccaaagtctccggctcggtgtcgaaaaagacc
gatatcgtgatcgctgggccgggggcaggttccaagctgaagaaggcggaggagctcggg
gttcagaccatggacgaggatgagtggctggcgctgatcggcgggtaa
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