Marinobacter metalliresistant: NLK58_01585
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Entry
NLK58_01585 CDS
T10462
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmee Marinobacter metalliresistant
Pathway
mmee03030
DNA replication
mmee03410
Base excision repair
mmee03420
Nucleotide excision repair
mmee03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NLK58_01585 (ligA)
03410 Base excision repair
NLK58_01585 (ligA)
03420 Nucleotide excision repair
NLK58_01585 (ligA)
03430 Mismatch repair
NLK58_01585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmee03032
]
NLK58_01585 (ligA)
03400 DNA repair and recombination proteins [BR:
mmee03400
]
NLK58_01585 (ligA)
Enzymes [BR:
mmee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NLK58_01585 (ligA)
DNA replication proteins [BR:
mmee03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NLK58_01585 (ligA)
DNA repair and recombination proteins [BR:
mmee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NLK58_01585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NLK58_01585 (ligA)
MMR (mismatch excision repair)
DNA ligase
NLK58_01585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NLK58_01585 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
5_3_exonuc
RNA_pol_A_CTD
GAGA
Motif
Other DBs
NCBI-ProteinID:
WZF88934
UniProt:
A0ABZ2W3C6
LinkDB
All DBs
Position
334797..336833
Genome browser
AA seq
678 aa
AA seq
DB search
MSKATPETIQRVEELRSVIDDHNYHYYVLDDPRIPDAEYDRLFRELQRLESDYPELASDN
SPTRRVGSAVETSFEEVVHRLPMLSLDNAFSDDELRDFDRRVRDRLGVSEEVEYVCEPKL
DGLAVSLHYENGSLTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPELVEVRGEVYM
PREGFEQLNRRLADRGEKTFVNPRNAAAGSLRQKKSTVTAKRPLEMCAYSVAVTDESLLP
ETQWDGLQRVRSWGFRINPEMRKARGVDECLEAYNELMAKRDTLPYEIDGIVFKVNRLDQ
QKALGFVSRAPRWAIAQKFPAQEELTVVEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEIRRLDVHIGDTVFIRRAGDVIPQVVKVVTEKRPVNARQVELPATCPVCDSDVI
QIEGEAVARCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDILVDRGMVETVADLYR
LTADDLMRLERMGEKSASNLVDAIDRARNPVLWRFLYALGIREVGEATAKALASHFGTLE
AIAAADEETLQTVPDVGPIVAGHIRSFFDQTHNRETLDALREAGVNWQEEPIQQGDQPLK
GQTWVLTGTLSEMTRDEARERLESLGARVAGSVSRKTACVVAGEAAGSKLARAEQLEVPV
LDEAGLLALLKEHGLEPG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagccacgcccgagaccatccagcgtgttgaagaactccgttcggttatcgac
gaccacaattaccattactacgtcctcgacgatccccgtattccggatgcggagtacgac
cgtctgttccgggaattgcagaggctggaatcggattacccggagctggcatcggacaat
tcaccaacccgccgggttggcagtgccgtggaaaccagtttcgaggaagtggttcaccgg
ttgcccatgctgtctctggacaacgcgttcagtgacgatgaactccgggattttgaccgg
cgcgtgcgggatcggctgggcgtcagcgaggaagtggaatacgtctgtgagcccaagctg
gacgggctggcagtcagcctgcattacgaaaatggctcgctgacaaccgccgcaacccgt
ggcgacggctattccggtgaagatatcaccgccaacatccggaccattccgtcggttccg
ctcaaactgcgtggtgacgatgtgccagagcttgtcgaggtgcggggcgaagtctacatg
cccagggagggctttgagcagctcaatcgccggcttgccgaccgcggcgagaaaaccttt
gtaaatccccgaaacgcggcggctggtagcctgagacagaaaaaatccacggtcaccgcc
aagcgtcctctggaaatgtgcgcctacagtgtggcagttacggatgaaagcctgcttccg
gagacccagtgggatggtcttcagcgggtccgcagctgggggttccggatcaatccggag
atgcgcaaggcgcggggtgtggatgagtgtcttgaggcctataacgaactgatggcaaaa
cgggacaccttgccctacgaaattgatggcattgtgttcaaggtcaaccgcctggatcag
cagaaagcgctgggatttgtgtcccgggcgccgcgctgggccatcgcccaaaaattcccg
gcccaggaagagctgaccgtcgttgaggacgttgaattccaggttggccggaccggcgcg
gtaacccctgtggcgcggctgaagccggtatttgtaggcggtgtcacagtgagcaatgcc
accctgcataacatggacgaaatccgccgtctcgatgttcacattggcgacaccgtgttt
atccgcagggctggtgacgttattcctcaagtggtcaaggtcgttacggaaaagaggccg
gtaaacgcccggcaggttgagctgccggcaacgtgtccggtttgtgattccgatgttatc
cagattgaaggggaggccgtggcccgttgctccggcggcctgttctgcccggcccagcgc
aaagaggcgatccggcactacgcctcccgcaaggccctcgatatcgaagggttaggggac
aagtggatcgatattctggtcgatcggggcatggttgagaccgttgcggacctgtatcgc
ctgaccgccgacgatctgatgcgcctggaacggatgggcgagaaatctgcctcgaatctt
gtggatgccatcgaccgcgccagaaacccagtactctggcggttcctctacgcgctcgga
atccgggaggtcggagaggctacggcaaaagccctggcttcccattttggaaccctggaa
gccattgccgccgcagacgaggaaaccctgcaaacggtcccggatgtcggtcccattgtg
gcggggcatatccggagtttctttgatcagacccacaaccgggagacgctggatgcgctc
cgggaagcgggcgttaactggcaggaagaaccgatacaacagggcgatcagcccctcaag
ggccagacctgggtgctgacgggaacgctctcggaaatgacccgggatgaggccagggaa
agactggagtcccttggcgccagggtggccggaagcgtatccaggaaaacggcttgcgtt
gtggccggtgaagccgccggctccaaactggccagggccgagcaactggaagtgccggtc
ctggatgaagcgggtttgctggcgttgttgaaagaacatggcctggagccgggctga
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