Marinicellulosiphila megalodicopiae: TYM08_P1674
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Entry
TYM08_P1674 CDS
T10978
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmeg Marinicellulosiphila megalodicopiae
Pathway
mmeg03030
DNA replication
mmeg03410
Base excision repair
mmeg03420
Nucleotide excision repair
mmeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TYM08_P1674
03410 Base excision repair
TYM08_P1674
03420 Nucleotide excision repair
TYM08_P1674
03430 Mismatch repair
TYM08_P1674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmeg03032
]
TYM08_P1674
03400 DNA repair and recombination proteins [BR:
mmeg03400
]
TYM08_P1674
Enzymes [BR:
mmeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TYM08_P1674
DNA replication proteins [BR:
mmeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TYM08_P1674
DNA repair and recombination proteins [BR:
mmeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TYM08_P1674
NER (nucleotide excision repair)
GGR (global genome repair) factors
TYM08_P1674
MMR (mismatch excision repair)
DNA ligase
TYM08_P1674
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TYM08_P1674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BCE01611
LinkDB
All DBs
Position
1997999..2000128
Genome browser
AA seq
709 aa
AA seq
DB search
MTPDLFEQSNKKEKQDNQTISEKIESLRQQIEGHNYRYYVLDEPFVSDSTYDKLMQELIA
LESKYPEFQSNVSPTQKVGAEVKAGFTTVNHEIPMLSLDNAFNEQDMHEFSKRIDNRINN
TQTLKFACEPKLDGIAVSLLYIEGQLTRGATRGDGATGEDITANVRAIQNIPLRLMGSGY
PKILEVRGEIYMPKKSFEALNVLAEKQGTKSYVNPRNAASGSVRQLDANITSQRKLEMCA
YSVGLVDGDGLAQNHSEILDQLKSWGIKINENSKVVDGVNGCLEYFDHLSNIRNSLDYEI
DGVVFKVDDLILQQRLGFVSRAPRWAIAHKFPAQEESTIVEKVEFQVGRTGAVTPVARLK
PVFVGGVTVSNVTLHNMDEVERLGLYEGDTVLISRAGDVIPKVMANLSKRLMDQNESDSK
GDLIKSELCKVEERSKKVVAPDCCPVCSTKLVRIEGEVIIRCMNSLECSAQKTEGFKHFV
SRKALDVDGLGEKLIEVLVEKEQLKHFDDLFYLELEQLANLDRMAEKSAQNVLDAIEKSK
ATTLNRFIYALGIREVGVATANNLVTHFLTLDNIMTASKEALLEVDDIGPVVAEYILQFF
AIDSNVELVNKLATILNWPEVVKKEGLPLNGQSWVVTGKLSVMSRDEVKDKLISLGAKVA
GSVSKNTHTLVAGEKAGSKLAKAQTLNVSILNEQQFIQWLDNLIGEQNS
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgactcctgatttatttgaacaatccaataaaaaagaaaaacaagacaatcaaacaata
tcagaaaaaatagaatcactcaggcaacaaattgaagggcataattaccgttattatgtc
cttgatgaaccatttgtgtctgattcaacctacgataaattgatgcaagagttaattgca
ttagaatctaaatacccagaatttcaatccaatgttagtcccacccaaaaagtaggcgca
gaagtcaaagctggatttacaactgtaaatcatgaaatcccaatgttgtcattagataat
gcatttaatgaacaagacatgcatgaattttctaaacgtatcgataaccgaattaataat
actcagacacttaagtttgcctgtgagccaaaattagatggtatcgctgttagtttatta
tatattgaaggccaattaacccgaggtgctacacgcggtgatggcgcaaccggcgaagat
ataacagccaatgttcgtgctatacaaaatattccattaagattaatgggaagtggatat
ccaaaaattttagaagttcgtggcgaaatttacatgccgaaaaaatcatttgaagcatta
aatgtattggcagaaaagcaaggtacgaaaagttatgtcaatccaagaaatgcagcatct
ggcagtgtgcgtcaattagatgcaaatattacaagtcagcgtaaattggaaatgtgtgca
tatagtgtcgggttagttgatggtgatggacttgcgcaaaaccacagtgaaatattggat
caattaaaaagctggggaataaaaataaatgaaaactcaaaagtggttgatggagtaaat
gggtgtcttgaatactttgatcacttaagtaatatcaggaattcgttagattatgaaatt
gatggcgtcgtttttaaagtagatgatttaattctacaacaacgattgggatttgtttcg
cgtgcgcctcgttgggcaattgctcataaatttccagctcaagaagaaagtaccatagtc
gaaaaagttgaatttcaagttggcagaacgggagcggtgactcctgtggcaagattaaag
cctgtatttgttggtggtgtgactgtttcaaatgttacgctacataatatggacgaagta
gagcggttgggtttatatgaaggcgatacagtattaataagtcgtgctggagatgtgatt
ccaaaagtaatggcaaatttaagcaaacgtttaatggatcaaaatgaaagcgattcaaaa
ggggatttaataaaatctgaattatgcaaagtggaagagcgatctaaaaaggttgttgcc
cctgactgctgtccagtttgctcgacaaaattagtgcgtattgaaggtgaggtgattatt
cgctgtatgaattctttagaatgcagtgcacaaaaaaccgaagggtttaaacattttgtt
tcaagaaaagcattggatgtcgatgggttgggtgaaaaacttatagaagtgttagttgaa
aaagaacagcttaaacattttgatgatttgttttatttagaattagaacaattagcaaat
ttagaccgtatggctgaaaaatccgctcaaaacgtgcttgatgccattgaaaaaagtaaa
gctactacgttaaatcgattcatctatgccttaggtatacgtgaagtgggtgtggcaact
gcaaataatttggtcacgcattttttaacgttagataatataatgacagcctcaaaagag
gcattacttgaagtggatgatattggtcctgtggtcgctgaatatattttgcaattcttt
gcaattgattccaatgttgaattagtgaataaattagcgacaatcttaaattggcctgaa
gtagttaaaaaagaaggcttgccattaaatggtcagtcttgggtggtgacaggtaagtta
tctgtaatgagtcgtgacgaagtaaaagataaactgatttcattgggtgcaaaagtagca
ggctcagtttcaaaaaacacccatacattagttgctggtgaaaaagcaggcagtaaatta
gctaaagcacaaacattaaatgtgtccattttaaatgaacaacaatttattcaatggtta
gacaacttaatcggagagcaaaattcatga
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