Candidatus Mycobacterium methanotrophicum: M5I08_05260
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Entry
M5I08_05260 CDS
T08748
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Pathway
mmeh03030
DNA replication
mmeh03410
Base excision repair
mmeh03420
Nucleotide excision repair
mmeh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M5I08_05260 (ligA)
03410 Base excision repair
M5I08_05260 (ligA)
03420 Nucleotide excision repair
M5I08_05260 (ligA)
03430 Mismatch repair
M5I08_05260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmeh03032
]
M5I08_05260 (ligA)
03400 DNA repair and recombination proteins [BR:
mmeh03400
]
M5I08_05260 (ligA)
Enzymes [BR:
mmeh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M5I08_05260 (ligA)
DNA replication proteins [BR:
mmeh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M5I08_05260 (ligA)
DNA repair and recombination proteins [BR:
mmeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M5I08_05260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M5I08_05260 (ligA)
MMR (mismatch excision repair)
DNA ligase
M5I08_05260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M5I08_05260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Auto_anti-p27
HHH_8
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UQX11830
LinkDB
All DBs
Position
968409..970472
Genome browser
AA seq
687 aa
AA seq
DB search
MSSAEADAIAPEVRRLWREVADEVREHQFRYYVRDAPIISDADFDQLLRRLQTLEEQYPE
LRTPDSPTQLVGGAGFATDFTSADHLERMLSLDNVFSTDEFDVWAARIHAEVGNDVPFLC
ELKIDGVALALVYRDGRLVRAATRGDGRTGEDVTLNARTIDDVPERLTASDDYPVPDVLE
VRGEVFFRVADFEALNAALVEDGKTPFANPRNSAAGSLRQKDPAVTARRKLRMICHGVGH
IEGFRPPTLHDTYLALGAWGLPVSEHTTRVQSAAGALERIAYWGEHRHDVDHEIDGVVVK
VDDVTLQRRLGSTSRAPRWAIAYKYPPQEVQTRLLDIRVNVGRTGRVTPFAFMTPVTVAG
STVGLATLHNAAEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPE
CGTPLAPAKEGDADIRCPNARACPAQLRERVFHVAGRGAFDIEGLGYEAAIALLKADVIG
DEGDLFGLTEDDLLRTELFTTKSGAVSANGKRLLANLDRAKKQPLWRVLVALSIRHVGPT
AARALATEFGSLDAITSASTEQLAAVEGVGPTIAAAVTEWFTVDWHRAIVDKWRSAGVRM
ADERDASVPRTLEGLTIVVSGSLTGFSRDDAKEAIVARGGKAAGSVSKKTDYVVAGDSPG
SKYDKAVELGVPILDEDGFRELLADGP
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcagcagaggctgacgcgatagcgccggaagtccgcaggctttggcgcgaagtg
gccgacgaggtgcgcgaacaccagttccgctactacgtgcgcgacgcgccgatcatttcc
gacgcggacttcgaccagctactgcgtcggctccagacactcgaggagcagtatcccgag
ctgcgcacgcccgactcgccgacccaactcgtcggcggcgcaggcttcgccaccgatttc
acctcggccgaccatttggagcggatgctgtcgctggacaacgtgttcagcaccgacgag
ttcgacgtgtgggcggcgcgcatccacgccgaggtcggtaacgatgtgccgtttctgtgc
gagctcaagatcgacggtgtcgcactggctttggtgtaccgcgacggacggctggtgcgg
gccgcgacccgcggcgacggccgcaccggcgaggacgtcacgctcaacgctcgcaccatc
gacgacgtccccgagcggctcaccgccagcgacgactacccggtgcccgacgtgctcgag
gtgcgcggtgaagtgtttttccgggtcgccgatttcgaagcgctcaatgcggcgctggtc
gaagacggcaagacgccgttcgccaacccccgtaacagcgcggccgggtcgctgcggcaa
aaggacccggcggtcaccgcgcgccgcaagctgcggatgatctgccacggggtgggacac
atcgaagggtttcggccaccgaccctgcacgacacgtacctggcgctgggcgcctggggc
ctgcccgtctccgaacacaccacgcgggtgcaaagcgctgccggcgccctcgagcgcatc
gcctactggggcgagcaccgccacgacgtcgaccacgaaatcgacggcgtcgtcgtcaaa
gtcgacgatgtgacgctgcagcgcaggctgggatccacctcgcgggcaccgcggtgggcg
atcgcctacaaatacccgccgcaggaggtacagaccaggctgctcgacatccgggtgaac
gtcgggcgcaccggccgggtcacgccgttcgcgttcatgacaccggtcaccgttgccgga
tcgacggtcgggctggccaccctacacaacgccgccgaggtcaagcgcaagggtgtgttg
atcggcgacacggtggtgatccgcaaggccggcgacgtgatccccgaagtgctgggtccg
gtggtcgacctgcgcgacggctccgagcgcgaattcgtcatgccgacaacgtgtcccgaa
tgcggaactccgctggcgccggccaaggagggcgacgctgacatccgctgccccaacgcg
cgggcctgcccggcgcaattgcgtgaacgggtatttcacgtcgccggtcgcggcgccttc
gacatcgaaggcctgggctacgaggcggccatcgcgctgctgaaagcagacgtgatcggc
gacgagggtgacctgttcggcctgaccgaagacgacctgctgcgcaccgagttgttcacc
accaaaagcggggcagtgtcggccaacggcaagcggctgctggctaacctggaccgggcc
aagaagcagccgctgtggcgggtgctggtggcgctgtcgattcgccacgtcggtccgacc
gctgcccgcgcactggcgaccgagttcggcagcctggacgccatcacgtccgcctcgacc
gagcagctggccgccgtcgagggggtcggcccgaccattgccgccgcggtgaccgaatgg
ttcaccgtcgactggcatcgggccatcgtcgacaaatggcgctcggcgggcgtgcggatg
gccgacgagcgcgacgccagcgtgccccggacgctggaaggattgacgatcgtggtgagc
ggctcgttgaccggcttctcccgcgatgacgccaaggaggccatcgtggcgcggggcggc
aaggccgccggttcggtgtcgaagaagaccgactacgtcgtcgccggcgattccccggga
tcgaagtacgacaaggcagttgagctcggcgtgcccatcctcgacgaggacggattccga
gagctgttggccgacgggccttga
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integrated database retrieval system
