Methylococcus mesophilus: OOT43_07885
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Entry
OOT43_07885 CDS
T09468
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmeo
Methylococcus mesophilus
Pathway
mmeo03030
DNA replication
mmeo03410
Base excision repair
mmeo03420
Nucleotide excision repair
mmeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OOT43_07885 (ligA)
03410 Base excision repair
OOT43_07885 (ligA)
03420 Nucleotide excision repair
OOT43_07885 (ligA)
03430 Mismatch repair
OOT43_07885 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmeo03032
]
OOT43_07885 (ligA)
03400 DNA repair and recombination proteins [BR:
mmeo03400
]
OOT43_07885 (ligA)
Enzymes [BR:
mmeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OOT43_07885 (ligA)
DNA replication proteins [BR:
mmeo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OOT43_07885 (ligA)
DNA repair and recombination proteins [BR:
mmeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OOT43_07885 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OOT43_07885 (ligA)
MMR (mismatch excision repair)
DNA ligase
OOT43_07885 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OOT43_07885 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
UZR30542
LinkDB
All DBs
Position
complement(1700258..1702285)
Genome browser
AA seq
675 aa
AA seq
DB search
MSAPAELIEKASKLREEIEFHNARYYQLDDPLITDAEYDRLMAELLAIEARYPELVTPDS
PTRRVGAPPVETFAEVRHEVPMLSLENAFSDEDLTAFDRRVRKELSREEVEYVAEPKLDG
LAVNLLYQDGVLVRAATRGDGAVGEDVTHNVRVIRAIPLRLRGDGFPAHFEVRGEVFMPK
QGFLALNERARGNGEKVFVNPRNAAAGSLRQLDARVTASRPLSFYAYGIGAFPDDRLPAT
QHELVESFKRWGLPVSPELRVVQGATGCLEYYRSLGERRHSLPYDIDGVVYKVDGLQLQV
ELGFVSRAPRWAIAHKFPAEEARTRVLAIDVQVGRTGVLTPVARLEPVFVGGVTITNATL
HNADEVRKKDVRQGDTVVVRRAGDVIPEVVRVVPELREPGAEPFHLTERCPECGSAVETE
PGEALARCSGGLYCPAQHKESIKHFASRRAMDIEGLGDKLVDQLVDRKLIGTVADLYRLS
LDQLAGLDRMGTKSAANLLEALERSKRTTLARFLYALGIRDVGEVTAKALADHFGSLDAL
MAATEDELVAVADVGPVVSGHIRLFFAQAHNREVIAQLLDCGVGWETPAAAPEASELPLQ
GLVFVLTGTLAAMSRDEARARLEALGAKCTGSVSKNTNYVVAGEEPGSKLAKASELGIPV
LDEDAFLAMLERGRP
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgctcctgccgaactgatcgagaaagccagcaagctgcgcgaggagatcgagttt
cacaacgcccgctactaccagctcgacgaccccctgatcaccgatgccgagtatgaccgc
ctgatggcggaactgctcgccatcgaggcacgatacccggagctcgtcacccccgattcg
ccgacccggcgcgtcggcgccccgccggtcgaaacctttgccgaggttcgccatgaagtg
ccgatgctgtcgctggagaacgcgttcagcgatgaagatctcaccgctttcgacaggcgg
gttcgcaaggagctgtcccgggaggaggtcgaatatgtcgcagagcccaaactggacggg
ctcgcggtcaatctgctgtaccaggacggtgtcctggtcagggccgccacccgcggtgat
ggcgcggtcggcgaggacgtgacccacaatgtccgggtcatccgggcgattcccctgcgg
ctgaggggcgacggtttcccggctcatttcgaggtgcggggcgaggttttcatgcccaaa
cagggattcctggctctcaacgagcgcgcccgcggcaatggtgaaaaagtgttcgtgaat
ccgcgcaacgccgcggcgggcagcctccgccagctcgatgcccgggtcacggcctcgcgc
ccgttgtcattttatgcctacggcatcggtgcctttccggacgaccgtttacctgccacg
cagcacgagctcgtcgaatcgtttaagcgctggggcctgccggtttcgccggaacttcgc
gtcgttcagggagcgaccggctgcctcgagtactaccgttcgctgggggagcgccgccac
agcctgccttacgacatcgatggggtagtgtacaaggtcgacggcttgcagcttcaggtc
gagctgggattcgtctcacgtgcgccgaggtgggccatcgcgcacaaatttcccgccgaa
gaggcgaggacccgggtactggcgatcgacgtgcaggtgggtcgtactggcgtgctgacc
ccggtggcgaggctggagccggtattcgtcggcggggtgaccatcaccaacgcgaccctc
cacaatgccgacgaagtccgcaagaaggatgtccggcagggagacacagtggtcgtgagg
cgggccggcgacgtgatccccgaagtcgtacgggtcgttcccgagctgcgggagccgggg
gcggagccgtttcacctgactgagcgctgtcccgaatgcggttccgccgtggaaacagag
ccgggcgaggcgctggcccgctgcagcggcggcctgtattgcccggcccagcacaaggaa
tccatcaagcatttcgcgtcccggcgggcgatggacatcgaaggcctgggggacaagctg
gtggatcagctcgtggacaggaagctgatcggaacagtggccgacctttaccgcctgagc
ctggaccagcttgcggggctggaccggatgggaacgaagtccgcagccaatctgctggag
gcgctggagcgtagcaagcgcaccacgctggcgcgtttcctctacgcgctcggcatccgc
gatgtcggcgaggtgacggccaaggcgctggcggatcatttcggttctctcgacgccctg
atggcggccacggaagacgaacttgtggcggtcgcggacgtcggtccggtcgttagcggc
catatccggctgtttttcgcacaggcgcacaaccgcgaggtgatcgcccaactgttggac
tgcggcgtgggctgggaaacgccggcagccgcccctgaagccagcgaattgccgctgcag
ggattggtcttcgtgctcacggggacgctcgccgcgatgagccgggacgaagcgcgtgcc
cggctcgaggctctcggggcgaaatgcaccggcagcgtttccaagaacaccaactatgtc
gtcgccggcgaggagccgggctccaagctggccaaggcttcagaactcggcattccggtg
ctggacgaggacgcctttctggcgatgctcgaacgcggacggccttaa
DBGET
integrated database retrieval system
