Mercenaria mercenaria (northern quahog): 123546060
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Entry
123546060 CDS
T07835
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mmer04054
]
123546060
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123546060
Pattern recognition receptors [BR:
mmer04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
123546060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
ResIII
DEAD
Helicase_C
AAA_19
SRP_TPR_like
IstB_IS21
SWI2_SNF2
AAA_22
SLFN-g3_helicase
Yippee-Mis18
AAA_16
nSTAND3
Terminase_6N
UvrD-helicase
MlaE
DUF87
Motif
Other DBs
NCBI-GeneID:
123546060
NCBI-ProteinID:
XP_053406447
EnsemblRapid:
LOC123546060
LinkDB
All DBs
Position
9:26273692..26391209
Genome browser
AA seq
1169 aa
AA seq
DB search
MASCREFSSVGREMEPEEKELEATIQFFLEAFRSYVVQTVDYRDLMMYKYFSIEQRKEFR
NLAKKEANECVTDRMVDTILEMKDKPDRFSALVSLFKEEFGNEKVVGILKGEKMPSNFKD
HKDKIQKTMMKTICNNLHVIHIIPQLMNRNLIVQREADNLRNVENNHSKYEAAIDLVLML
PNRCVDWYPRFMICLIDSGQEPLAETLDKDLYQEILSHRKRKMAENSDKCWSLDDDNEFC
ENFGQSSLVSVEVPLRQSSYQDTLRSSDETQLKEMYRGELSLANNEDDTDEIEDTDISLR
EYQRELAAPALQGKNVIIVAPTGSGKTRVAMRIIQEHIRQQKGRGIAKVIFLVNQVVLAN
QQGEACRGLLKKYTSKVITGESQRKSECLKDFIDKRDILVVTAQVLLNALCRKEISGINK
FSLIVFDECHHTHANHTFNQIMGRYMDLMFDKPDHCLPQIVGLTASVGVGKARNEEKAME
HIKHLMANLDAQVICTVQRNMGELRQHVSLPEEETHKVPKRQNDVFQENVIKLMNTIEKR
MTQSSLVKEIPEASKIEGALKAPAQKGTAQYTQWVSKLCRETAKLKSSEASRFLNHCMTH
LEHYNNALIIYNDARMEDALGYLDAEMNRWKENAIMDENESILYGAFKKLRSARFRNCPN
PKLDKLCQMITKAYEGNFENSRGIVFVKTRDLSKAILSWMKETPFLRELNPIVFVGTNMA
AGKGVVKEIPEASKIEGALKAPAQKGTAQYTQWVSKLWRETAKLKSSEARRFLNPCRTHL
EHYNNALIIYNDARMEDALGYLDAEMNRWKENAIMDENESILYGAFKKLRSARFRNCPNP
KLDKLCQMITKAYEGNFENSRGIVFVKTRDLSKAILSWMKETPFLRELNPIVFVGTNMAA
DKGGMTKAEQVDALEYFKSGKHKLIIATSVAEEGLDISKCNLVIRYDHVTNEIAMVQSRG
RGRAADSKYYVIAEENTGMAEKEELNMIREIMMRKAIIRLQEYIQKNPDKFRQEIHKFQD
EANLDRQLKSLGSRRKLIRTGQFELRCLKCDHFICWSDDVKKIQDSHHVVTDEHLKERVT
FAKSGSTRYQDEAIQFVGKLICKECGGNLGVICIHRTLEFPVLKIENFLIVDTNGRQDTC
KKWKSVPFHVAPVTNEDFKEIVKARKGDL
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggcatcctgcagagaattttcttctgttggtcgtgagatggaaccagaggaaaaagaa
ctggaggcgacaattcagttttttctcgaggcattcagaagttacgttgtacaaactgtc
gattacagagatcttatgatgtataaatattttagtattgaacaaagaaaagagtttcga
aatctagcaaaaaaggaagccaatgaatgtgttacagacaggatggtggacacaattctc
gagatgaaggataaaccggacagattttcagcactagtcagtttgttcaaagaagaattt
ggaaatgaaaaagttgttggcattctcaaaggagaaaagatgccatccaatttcaaggat
cacaaagacaaaattcagaaaactatgatgaaaactatttgtaataacttacatgtaatc
catatcatcccacagttaatgaatcgtaatttgatagtgcaaagagaagcagacaatcta
cgtaatgtggaaaacaatcattcaaaatacgaagctgcaatagatcttgtactgatgtta
cctaatagatgtgttgattggtatcctagattcatgatctgtttaattgattcgggacaa
gaacctctggctgagacattggataaagatttatatcaggaaatactgagccacagaaaa
aggaaaatggcagaaaatagtgacaaatgctggtcattggatgatgacaatgaattttgt
gaaaattttggacagagttcattagtttcagttgaagttccattgagacaatcttcttac
caagacactttaaggagcagcgatgaaacacagcttaaagaaatgtacagaggagagctg
agtttagccaacaatgaagatgacactgatgagatcgaagatacagacatctcgctaaga
gaataccagcgagagttagctgcccctgccttacaaggaaagaatgtgataattgtagca
ccaacagggtctggtaaaactagggtggccatgaggattatccaggagcatatccggcag
cagaagggaaggggaatagcaaaggttatattcctcgtaaatcaggtggtccttgcaaat
cagcaaggtgaggcctgtagagggctactgaagaagtatacatctaaggtgataactgga
gaatcacagagaaagagcgaatgtctcaaagattttatagataaacgtgatatattggtt
gtcactgcccaagttctgctcaatgctttatgtagaaaagagatcagtggaataaacaag
ttctcacttattgtgtttgatgagtgtcatcatacacatgccaatcatacatttaatcaa
atcatgggaagatacatggatctcatgtttgataaacctgatcattgtttaccacagatt
gttggtttaacagcttctgtaggtgtaggtaaagcaaggaatgaggagaaagccatggaa
catatcaaacatttgatggcgaaccttgatgctcaggttatatgtacagtgcagagaaac
atgggagaactgaggcagcatgtcagtctaccagaggaagaaacacataaagtgcccaag
cgacaaaatgatgtttttcaagagaatgtgattaaactaatgaataccatagagaaaaga
atgacccagtcttcattggtgaaggagatccctgaagccagcaagattgagggtgccctg
aaagcccctgcccaaaaagggacagctcagtatacacagtgggttagtaagctgtgtagg
gaaactgcaaaactgaagagttctgaagctagtcgattcctaaatcattgtatgactcac
ctagagcattacaacaatgctttgattatatataatgatgcgagaatggaagatgctttg
ggttatctcgatgcagagatgaatcgctggaaggaaaatgccataatggatgaaaacgag
tccattctttatggagccttcaaaaaattaagaagtgccaggtttaggaactgtccaaat
ccaaagctagacaagttatgtcagatgataacaaaggcatatgagggtaactttgaaaac
tcacgtggtatagtgtttgtaaagacaagagatttgtccaaggcaatccttagctggatg
aaggagacaccatttctgagggagttaaatccgatagtgtttgttggaacaaatatggct
gcaggtaaaggagtggtgaaggagatccctgaagccagcaagattgagggtgccctgaaa
gcccctgcccaaaaagggacagctcaatatacacagtgggttagtaagctgtggagggaa
actgcaaaactgaagagttctgaagctagaagattcctaaatccttgtaggacacaccta
gagcattacaacaatgctttgattatttataatgatgcgagaatggaagatgctttgggt
tatcttgatgcagagatgaatcgctggaaggaaaatgccataatggatgaaaatgagtcc
attctttatggagcgttcaaaaaattaagaagtgccaggtttaggaactgtccaaatcca
aagctagacaagttatgtcagatgataacaaaggcatatgagggtaactttgaaaactca
cgtggtatagtgtttgtaaagacaagagatttgtctaaggcaatcctcagctggatgaaa
gagacaccatttctgagggagttaaatccgatagtgtttgttggaacaaatatggctgca
gataaaggaggtatgactaaagctgagcaagtggatgcactagagtatttcaaaagtggg
aagcacaagttgataatagcaacttcagttgcggaagaaggtctcgatatttccaagtgt
aatcttgttatcagatatgaccatgtgactaacgagatagcaatggtacagtccagaggc
agaggtagggcagcagacagcaagtattatgtgattgccgaggagaatacgggtatggca
gagaaggaggaactcaacatgatacgagagatcatgatgaggaaagctatcatccggcta
caggaatatatacagaagaatccagacaagtttcgccaggagattcacaaattccaagac
gaagctaacctagataggcagttgaaatctttgggatctagacgcaagttgattagaaca
ggacagtttgaactacgctgcctcaagtgtgatcatttcatatgctggtctgatgatgtg
aaaaaaattcaagattcccaccatgttgttactgatgagcatttgaaagaaagggtaaca
tttgctaaaagtgggtcaaccagataccaggatgaggctatccagtttgtcggcaagctc
atttgtaaagaatgcggaggcaacctcggtgtgatatgtattcatagaacattggaattc
ccagtacttaagatagaaaattttctgattgttgataccaatggcagacaggatacatgc
aagaaatggaaatcagtcccttttcatgtggcacctgtcactaatgaggattttaaggaa
atagtcaaagcaagaaaaggagatttatag
DBGET
integrated database retrieval system
