Mercenaria mercenaria (northern quahog): 123546680
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Entry
123546680 CDS
T07835
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mmer04054
]
123546680
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123546680
Pattern recognition receptors [BR:
mmer04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
123546680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
DEAD
ResIII
CARD_2
Helicase_C
RIG-I_C
AAA_19
SNF2-rel_dom
AAA_22
UvrD-helicase
DUF87
DUF1284
Motif
Other DBs
NCBI-GeneID:
123546680
NCBI-ProteinID:
XP_045189090
EnsemblRapid:
LOC123546680
LinkDB
All DBs
Position
9:21395273..21426507
Genome browser
AA seq
1019 aa
AA seq
DB search
MCDIETRVRDLRKEIVSCIKEPTIVSHLEARSVISTEESSRIKNQYLRDETYKAGEDLLE
CVLKSKEPGKWKSFLDALESADYQHLKALLLSEKDFDEFSAHAKTVMRLFTPYLEKIVIA
KEFVSELRARDVINGTDEDVILAMFANKGDIYSTMVLLERMQCRVAPQKWYYEFLDVLMK
KDHQQIVQEMEPDFIANPSSFMPRLGPINDEECEQYSKTTQIDEAQGACGSIREHIVADF
EEGDMDTNDLGAPPTPPVRQDSLQESMLESNLKELNIKPEMIKSFHVNSADLTGREEARN
EGSSDEDDSSSLDSDYENKEAETEAISAHTAAPLNLRKYQLELAENAILGRNTIICAETG
SGKTWVALHIIQKHLQQTGNGPRKVVFMARTGALIKQQSDRFKAYLPEFQTKLITGDDDE
SRMLNMFVENYDILCFTPQILVNNLEDNVIKSLSEFSLLILDECHHTRGDGPYSTLMRKY
LVEKAQTRNEMPQVVGLTASIGVGKSRTDMEAVEYILRVCACLDVRLLSTVERNLPELKK
HINMPDEETIQLVEQRDDPCKHEIMTAMEQTEDMLQDNSLMQPDMIDLMDKQPRNRESQE
YNKWTVDVMKAALLKVDDYDVSRDISSCAKYLNTYNSALEVNKLLLAKDVIKYLAEKHRQ
EGENKSKLTEMERNLYSNLQAIQKTMNVKGKNTENPNVRILSDTLRKMLEEKGDASRAMV
FVKARATCRSLATFLDKDLKNSGISASPLYGKENRGGDDGMTESQQTEILEKFREGFYKV
LVCTSVGNEGIDIPDCNIVLSYEYSGDEITKIQMKGRARKKEATTITMGSDKVVEQERIN
AYKAAMMYRALKRVQELDPKYFSMKVTAFQKEETHKYRFKAEVEKLKKGRKSDEDFEILC
GRCNTFACYVSDVRQLGHDHIVIDKAFADKITRKEHKKPKTYDGLHKKYKMFCKKCPLDW
GIIGIRDGLDCMILKIMNFKFRNLRTRGVSTYKKWIDMPYNVPEIRLEDLPRLLGTEDE
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgatattgagacccgagttcgagacttacgtaaggaaatagttagttgtattaaa
gaacctactattgtgtcacatctcgaagcaaggtcggtcatatctacagaggaaagttcc
agaataaagaaccagtatttgagagatgaaacgtataaggcaggggaagatcttctagaa
tgtgttctaaagtcaaaggagcccgggaaatggaagtcatttctagatgcgctcgagagt
gcagattatcaacacttgaaggcattgctgttgtccgaaaaagattttgatgaattttct
gctcatgccaaaacagttatgcgtttgtttacaccatatcttgaaaagatagtaattgca
aaagagttcgtgtcagagctgagagcgagggatgttatcaatggaactgacgaagacgtt
attctggctatgtttgcaaataaaggcgatatatattcaactatggttctgcttgaaaga
atgcaatgtagagttgcacctcagaaatggtattacgagtttcttgatgttcttatgaag
aaagatcatcagcaaatagtacaggagatggagccagactttatagcaaatccctcgtcg
ttcatgccaaggctaggacctatcaatgatgaagaatgcgagcaatatagtaaaacgacg
caaattgatgaggcccaaggtgcatgcggatccatacgtgaacacattgttgcagacttt
gaagagggagatatggatacaaatgacttaggagcacctccaacaccaccggtgaggcaa
gattccttacaagagagcatgctcgaaagcaatttaaaggagttgaacataaaaccagaa
atgataaaaagttttcatgtcaactctgcagacctgactgggagagaagaggctaggaat
gaaggcagtagtgacgaggatgattccagttcgttggactcagattatgaaaataaagaa
gctgagaccgaagctatttctgcacacacagctgcgccattgaatctgaggaaataccag
ttagaactagcagaaaatgccattcttggaagaaacactatcatctgtgcagaaactgga
tcgggaaaaacatgggttgccttgcatattattcagaaacatctacaacaaactggaaat
ggtccaagaaaagttgtgttcatggcaaggacaggcgctctcattaaacaacagtctgac
agatttaaagcttatctacctgaatttcagacaaaactcatcacaggagatgatgatgaa
tcaagaatgctgaacatgtttgtagaaaattacgacattctttgttttacaccacaaatc
ctggtgaacaacctagaagataacgtgataaaaagcttgtcagaattttctcttcttatt
ttggacgaatgccaccacacgagaggtgacgggccttacagtacactgatgagaaagtat
ctggttgaaaaagcccaaacaagaaatgaaatgccacaggttgtgggattgacagcgtca
attggtgtaggaaaatctagaacggacatggaagcagttgaatatattctgagagtgtgc
gcatgtttagatgtaagacttctatcaaccgtagagaggaatttgccggagctaaagaaa
catattaacatgcctgatgaagaaacaatacagcttgttgaacagagagatgatccctgc
aaacatgaaattatgaccgcaatggaacaaactgaggacatgctgcaagataattccttg
atgcaaccagacatgatcgacttgatggacaaacagccaagaaatcgagagtcgcaagaa
tataacaaatggacggtcgatgttatgaaagctgcacttttaaaggttgacgattacgat
gtatcaagagatatcagcagttgtgcaaagtacttgaatacatacaattctgcacttgaa
gtcaataagttattgcttgcaaaagatgtcatcaagtacttggcagagaaacatagacaa
gaaggagaaaacaaaagtaaactaacagagatggaaaggaatttatacagtaacttgcaa
gctatacagaagacaatgaatgtcaaaggaaaaaacaccgaaaacccaaatgtgaggatt
ttaagcgacacccttcgtaaaatgctggaagagaaaggggatgcatctagagcgatggta
tttgtaaaagcaagagcaacgtgtaggtctctagcaacatttttggataaggatcttaaa
aacagcggcatcagtgcaagtccactttacggaaaagaaaaccgtggtggcgatgacgga
atgacggaaagtcagcagacagagattctagaaaagtttcgagagggattctataaagtt
cttgtttgtacatcggttggaaatgagggtatcgatattcccgactgtaacattgtgctg
agctacgagtattcaggcgacgaaatcacaaagattcagatgaaaggtcgtgctcgtaaa
aaagaggcaaccacaattacaatgggtagtgataaagtagtagagcaggaaaggataaac
gcttataaggccgcgatgatgtatcgagcactaaaaagagttcaagagctggatcccaaa
tacttcagtatgaaagtgacagcctttcaaaaagaagaaactcacaagtaccgtttcaaa
gcagaagttgaaaagttaaaaaaggggagaaagtctgacgaagattttgagatcttgtgc
gggagatgcaatacatttgcttgctatgtctccgatgtcagacagctcgggcacgatcat
attgtcattgataaagccttcgcagataaaatcaccagaaaagagcacaaaaagccgaaa
acttacgatggattgcataagaaatacaagatgttctgtaaaaagtgtcctttagactgg
ggaataattggaatcagagatggattagattgtatgatcttaaaaatcatgaattttaaa
ttcagaaatctccgaacacgtggtgtcagcacctacaagaaatggatagatatgccatac
aatgttccagagataagactggaagatctgcctagattgctaggcacagaagacgagtaa
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