Mercenaria mercenaria (northern quahog): 123546752
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Entry
123546752 CDS
T07835
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mmer04054
]
123546752
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123546752
Pattern recognition receptors [BR:
mmer04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
123546752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
DEAD
RIG-I_C-RD
Helicase_C
ResIII
RIG-I_C
CARD
AAA_19
SNF2-rel_dom
DUF1390
AAA_22
Motif
Other DBs
NCBI-GeneID:
123546752
NCBI-ProteinID:
XP_053407030
EnsemblRapid:
LOC123546752
LinkDB
All DBs
Position
9:26090672..26113909
Genome browser
AA seq
1069 aa
AA seq
DB search
MTTFIEPRLLYFQQEVARCIKDPAVVSHLAAESVITAEDSSRIKKLYIDSDTFKATEEMI
NCLLKSRARGKWASFLYALEQSEYHYLKTLLESAGRPYESVERAREIIRIFTPLLEKEIN
GKDIVSELYSKKVINQTDQELILATYQTKGDTYATIVLLERMQCRLAPDEWFYIFLNVLT
EKGYKHVVEKIEPEFLQNPDQYRPVAETKRTPDMTQSNEETMNDLDDCSCSVGDTREHTI
ADFVEAEETMDDLAAPDSTAGPVSPELIGTETDSKTKISDSEELNELNLDKVNRNNTFRE
KEKTLGERAQPDGSESTESICQSENLKEFNIKPDISKSLTIDEVAPNKANVATCGTSCTN
IDDACSELDDTDTENDDIDSETTCGSLKLRDYQVELAEKHAVPGRNTIICADTGTGKTCV
AMYIIDKHLQTTTDGVRKVAFMARTGALIKQQADSLRRYLDSKYMIKLVTSDTDESKMLG
IYLDGYDIICFTPQILVNNLDNKNIESISVFSLLILDECHHTRKDEPYNKLMRRYLLQKN
EPSTDDRRLPQIVGLTASIGVGKAKGEVEALDHIMHVCACLDVRNLSTVEDSLEELKEYT
NIPTEENIPMVKRDNDPNKAILLSAMTETESIIQEKSSMQPKLVKLAYNQPADRELQSYG
TWANDMMTTAQSIFNSRSARDVASCAKYLQIYSAALEVNNLLRTEDIALYLAEKHQQEDE
NHDELTETEKTLFRDLRDVQRRLRREKNENPNVHIMSSILRKHFAGVDKDSRAMVFVQAR
ATCKALASLLNQEFSDIDIRASPLFGKENRGSDMGMTESAQTDIINKFRDGHFKVIVATS
VGTEGIDVPDCDITLNYNYTGNEITKIQMKGRSRKKGAKAVTLGNDKLLEREKKNVYRAS
LMTKAIKRFKEQSYDTICRKVLTFQREELRKYKNQVEVMNIKRSRQSSDHEYKVLCRDCS
AYLCNTSDIRKCGSSFMVADENFQDKIRKRLHDSPSKFGTIQKQYKMKCNGCPLDLGIIG
IKDGLECCILNIKALKFCSSVDGGITTYKKWIDMPYRILETTYEELPTE
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgacaacctttatagaaccaagactattatatttccaacaagaggtggctagatgtatc
aaggatccggcggtggtatcacatttggccgcagaatctgttattactgcagaggacagt
tcaagaatcaagaaattgtacatcgatagcgatactttcaaagcaactgaggaaatgata
aattgccttttgaaatcaagagcaagagggaagtgggcatcatttttgtatgctttagag
caatcagaatatcactacctaaagactctccttgaatctgctggtcgtccatatgaaagt
gttgaacgtgcaagagaaataatcaggatatttacaccactcttagagaaagaaataaac
ggaaaggacattgtatcagagttgtattctaaaaaagtcattaaccagacggaccaggaa
ttaatactagctacataccagacaaagggagacacgtatgctacaattgttttgcttgag
agaatgcagtgcaggcttgcccctgatgaatggttctatatatttctgaatgttttaact
gagaaaggctataagcacgttgttgaaaaaattgaaccagaattcttacaaaatcctgat
caatacagacctgtggcagaaacaaaaagaacgccagatatgacacagtcgaatgaagaa
acaatgaatgatttggatgattgttcatgcagtgtgggtgacacaagggaacatactatt
gcagatttcgttgaagcagaggaaacaatggatgatcttgccgctccagattctaccgcc
ggacctgtctcgccagaattaattggcacagaaactgatagtaagacgaaaatatcagac
agtgaagagctaaatgaactcaacctggacaaagtcaatagaaacaatactttccgggaa
aaagaaaagactctaggggaacgagctcaacccgatggtagtgaatcaactgaaagcata
tgtcagtctgaaaacttaaaggaatttaatatcaaacctgacatatcaaagagtcttaca
atagatgaagtggcaccgaacaaagcaaatgttgctacatgtggcacatcctgtacaaat
attgatgacgcatgttcagaattagatgacactgacacagaaaatgatgacattgattca
gaaaccacgtgtggatcattaaagttaagagactatcaggttgaactggcggagaagcat
gctgtccctggaagaaatacgataatatgtgctgatactggcaccggaaagacttgtgtt
gctatgtacattattgataaacatttacaaactacaacagatggcgtgcgaaaagtggca
tttatggctaggactggcgcacttatcaagcagcaagcagattcattgaggagatacttg
gactcgaaatatatgataaaacttgtgaccagtgacacggatgagtcaaagatgcttggt
atttatcttgatggatacgacatcatttgcttcactcctcaaatacttgtaaataacctt
gacaacaagaacattgagagtatctctgtgttctctcttttgatcttggatgaatgtcac
cacacaagaaaggatgagccttacaacaaattgatgcgaaggtatctactgcaaaagaat
gaacctagtactgatgatagacggcttcctcagatagttgggttaactgcttccattgga
gttggaaaggcaaaaggagaagtcgaagcactggatcatataatgcatgtttgtgcatgt
ttagatgtgcggaatttgtcaacagttgaggatagcctagaagaactgaaggaatatacg
aatattcctacagaagaaaacattccaatggttaaaagagacaatgatccaaacaaggct
attctgttgtcagcaatgaccgaaacggaatccataatacaagaaaagtcctcaatgcag
cctaaacttgttaaacttgcttacaatcaaccggctgatagagagctacaaagttatggt
acatgggcaaatgacatgatgactacagctcagtctatatttaacagcaggagcgcgaga
gacgtagcttcatgcgctaaatatctacagatttactctgctgccctcgaagtcaacaat
ctactgcgcacagaagatattgctttgtatctggccgagaaacaccaacaagaagatgaa
aatcatgatgaactaactgaaacagaaaagacgcttttccgagacttgcgagatgttcag
agaagactgaggagggagaaaaatgaaaatccaaatgttcatataatgagcagtatactt
cgaaaacatttcgctggtgttgacaaagattctagagcaatggtgttcgtccaggctcga
gcaacctgcaaggctttagcatctctacttaaccaagaattcagcgatattgatatcagg
gcaagtcctctgtttggaaaagagaatagaggtagtgacatgggaatgactgaaagtgct
cagactgatatcatcaataagtttcgtgatggacattttaaagtgattgttgcaacatca
gtagggaccgaagggattgatgttccagactgtgatatcactttgaattacaattacact
ggaaatgaaattacgaaaattcaaatgaaaggaagaagtagaaaaaagggtgccaaagca
gttacgttaggaaacgacaaattactggagcgtgaaaagaaaaatgtttacagggcaagt
ttgatgactaaggctattaaacgctttaaggaacaaagttacgatacgatatgcagaaag
gtacttacgtttcagcgggaggaattgcggaagtataagaatcaagtagaagttatgaat
atcaaaagaagtagacagtcaagtgatcatgagtacaaggttttatgccgcgactgtagc
gcttacttgtgcaacacgtcagatattcgcaaatgtgggtcgtctttcatggttgctgat
gagaatttccaggataaaattaggaaaaggctgcatgactcaccaagtaaatttggtact
atacagaagcagtacaaaatgaaatgcaacggatgtccacttgatttaggaataattggc
atcaaagatggactagaatgttgcattttgaatataaaggctctgaaattttgtagcagt
gtagatggtggaatcacaacatacaagaaatggatcgatatgccgtatagaattttggaa
actacttacgaagaattaccaacggaataa
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integrated database retrieval system
