Mercenaria mercenaria (northern quahog): 123546753
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Entry
123546753 CDS
T07835
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mmer04054
]
123546753
Enzymes [BR:
mmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123546753
Pattern recognition receptors [BR:
mmer04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
123546753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
DEAD
ResIII
Helicase_C
RIG-I_C
SNF2-rel_dom
CCDC-167
AAA_19
AAA_22
GIT_CC
ANTH
Motif
Other DBs
NCBI-GeneID:
123546753
NCBI-ProteinID:
XP_053407032
EnsemblRapid:
LOC123546753
LinkDB
All DBs
Position
9:26128612..26176858
Genome browser
AA seq
781 aa
AA seq
DB search
METEKKTPVLSEVVTLGERAPPEGHDVNGNSSGDDGETQNTPKLSKTIKIEKVEQNEDVP
QNDKTNLVANESDSETEESDDSSDETTDDVKPLAQKLYPFQLELAENALAGKNTIICAPT
GSGKTWVALYIIDSHLQSAADAGQKKVVFMARNGALVKQQMDFISKQLPFARVKHLKGDT
EEAMMMHAFLEDYDIFLFTPQILVNNLSTDVKSLSVFSLMVFDECHHTRGSEPYSMLMKN
YLMEKEKLKGTKNLPQIIGLTASIGTGRAKSQKDALDHIFRVCASLDVRCLSTVEKNRED
LAKHVSVPSEETIPMKRRPFDPCRSILLQAVKETGDFLEDIALMDPKLIQVMHKCPSDVE
SKRYAQWVAEVIKVAESLTRGQGRNIASCAKYLQIYYNALEINRLLRIPDVAFYIATQHV
EEAEYQDSFTKEETQLLKKLKELQKELRKLNAENPNVHAMSKILSNLFAGEDADVDSRAM
VFVHARATCRALADFLNDELEGNYVKTSPFLGKETRGADKGMTEDEQTYILEEFREGTFK
VLVATSVGMEGLDVPDCNMTLNYNFNVDEIKKIQMSGRSRKQKGKAVMIATDAQFVKDKI
TLYRIKLMTGAVEEFKKLDQNSVNRQVLAVQKKLLDDHKWQLKTRELKRIKQSDAIDYGI
LCRKCDAFVCNASDVRKFDTSYMVALRGFGEKICKKEHTKRANMGALKKKYKMFCQTCPK
DWGVIAVKDDIEYYVLKLENLKFVSSKDQEDVTTYKKWSEVPYKITELGIKDLSRMYDET
N
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggaaactgagaagaaaacaccagtcttgtctgaggttgtgacacttggggaaagggca
ccaccagaaggacatgatgttaacggcaatagttctggcgatgatggagaaacacagaat
accccaaaactaagcaaaaccattaaaatagaaaaagtagaacagaacgaagacgttcca
caaaacgacaaaacaaatttggttgcaaatgaatcagatagcgaaacagaagaatctgac
gatagctctgacgaaacaacggatgatgttaagccgctggctcagaaattgtatcctttc
caattagagttggcagaaaatgcgctagctggcaaaaatactatcatatgtgctccaaca
ggaagcggaaaaacctgggtagccttatacatcatagacagtcatttgcaatcggctgca
gacgcaggacaaaagaaagttgtatttatggcgaggaatggagctctagtcaagcagcaa
atggatttcatttccaaacaactgccgtttgcaagggtcaaacacttgaaaggagacacg
gaagaagctatgatgatgcatgcatttcttgaagattatgatatatttctcttcacacct
caaattcttgtcaataatttgagcacagatgtgaaaagcttatctgtattttctctgatg
gtgtttgatgaatgtcaccacacaagaggtagtgaaccgtatagcatgctgatgaaaaac
tacctaatggaaaaggaaaaattaaagggaaccaaaaatttaccacagattattggtctg
acagcatctataggcaccggaagagcaaaatcccagaaagatgcccttgatcatatattt
cgagtgtgtgcaagtctagatgtaagatgtttatcaacagtagaaaagaaccgagaagat
ctagctaaacacgtcagtgtacctagtgaagaaacaataccaatgaaaagacgaccattt
gatccttgcagaagcattcttcttcaagcagtgaaggaaacaggagattttctggaagat
atagctttaatggatccgaaattgatacaagttatgcacaaatgtccgagtgatgtagag
tcaaaacgatatgcacagtgggtggcagaagttatcaaggttgctgaatcacttacccga
ggtcaagggagaaatattgcatcatgtgcgaaataccttcagatttactacaatgccttg
gagataaacagattacttagaatccctgatgttgcattctacattgctacacagcatgtg
gaagaagctgaataccaggatagtttcacaaaggaagaaacacaacttttgaaaaaattg
aaagaattgcagaaagagctaagaaaactgaatgctgaaaatccaaatgttcatgccatg
agtaaaatcttgtcaaatctttttgctggcgaggacgccgacgttgactctagggcaatg
gtatttgttcacgctagggcaacatgtagagcgttggcagattttctcaatgacgagttg
gaaggaaactatgtgaaaacaagtcctttcctaggaaaagaaactagaggcgctgataaa
ggtatgactgaagatgaacagacatacatattagaagagtttcgggaaggaactttcaaa
gttcttgtggctacatcggtcggaatggaaggtctagatgtacccgactgtaacatgact
ttaaactataacttcaacgtggatgaaattaaaaaaatacagatgtcagggcgtagcaga
aagcagaaaggaaaagcagttatgatagctactgatgctcaatttgttaaggacaaaatt
acattgtacaggataaaactgatgacaggtgctgtagaagaattcaagaagttggatcaa
aactctgtcaacagacaagtacttgcagttcagaagaaactgttagacgaccacaaatgg
caactgaaaacaagagaacttaaacgtatcaagcaatccgatgcaatcgattatggaata
ctatgcaggaaatgtgatgcgtttgtttgcaatgcatctgatgttcgaaaatttgacacg
tcatatatggttgctttgcgaggctttggagagaaaatctgtaaaaaagaacacacaaaa
agagcaaatatgggcgctttaaaaaagaagtataagatgttttgccaaacgtgtcccaaa
gactggggagtcatcgcagttaaggatgacatcgagtattacgttctgaaattagaaaac
ttaaaatttgtcagcagcaaagatcaagaagatgtgacaacctacaaaaagtggtctgag
gtgccatacaagatcacagaacttggaattaaggatttgtcccgtatgtatgacgagacc
aattaa
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