Mercenaria mercenaria (northern quahog): 128546948
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Entry
128546948 CDS
T07835
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128546948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmer03041
]
128546948
Spliceosome [BR:
mmer03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128546948
Complex C
U5 SnRNP specific factors
128546948
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
EFL1
Roc
MMR_HSR1
Septin
Motif
Other DBs
NCBI-GeneID:
128546948
NCBI-ProteinID:
XP_053374352
LinkDB
All DBs
Position
11:complement(6208980..6242354)
Genome browser
AA seq
972 aa
AA seq
DB search
MDGDLYDEFGNYIGPELDSDDDDDSDDSGDQDDVEKYPDYGGADEEEAMDQDEEDASDMQ
VVLHEDKKYYPTPEEVYGPEVETIVQEEDTQPLTEPIIAPVKKKKFSMAEQDLPDTVYNM
EFLADLMDTPELIRNVTLCGHLHHGKTTFVDCLVSQTHPEINVKDDKDIRYTDTLFTEIE
RGVSIKSTPVTLVLPDTRNKSYLVNVFDTPGHVNFSDEVTAALRISDGAVIFVDAADGVM
LNTERFIKHAIQEKLPVCVCINKIDRLILELKLPPTDAYFKLRNILDDINGIVSLYTEEE
GGQQVSPLIGNVCFASSYYRLCFTLGSFAKIYSDTYGGINEKEFARRLWGDIYFNSKTRK
FSKKPPNSSAQRSFVEFILEPLYKIFAQIVGDVDSSLPRVCDELGISLTSEEKKLNIRPL
MRIVCRRFFGDFTGFVDMCVDHIRSPLDNARSKIEHIYTGPMESDLVDMMVQCDSDGPLM
VHTTKLYPTQDATCFHVFGRVISGTLYANQEVRILGENYTLQDEEDSRFGQIGRLWISEA
RYKIEVNRVPAGNWILIEGIDQPIVKTATITDTSAPEEVHIFRPLKFNTSSVIKIAVEPV
NPSELPKMLDGLRKVNKSYPLVTTKVEESGEHIILGTGELYLDCVMHDLRKMYSEIDIKV
ADPVVSFCETVVETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIENEVVQITWPRKRLG
EFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGAVKDSIVQGFQWATR
EGPLCDEPIRNVKFKILDAVIAQEPIHRGGGQIIPTARRVAYSAFLMATPRMMEPYYFVE
VLAPADCVSAVYTVLARRRGHVTQDSPVPGSPLYTIKAFLPAIDSFGFETDLRTHTQGQA
FCLSVFHHWQIVPGDPLDKSIHIRPLEAQPATHLAREFMVKTRRRKILHILHHDCERGDT
QSIQSDKWLNGM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatggagacctgtatgatgagtttggtaactatataggtccagaattagacagtgat
gatgatgatgacagtgatgattcaggagatcaggatgatgttgagaaataccctgactat
ggaggagctgatgaggaggaggcaatggaccaggatgaagaagatgcctcagacatgcaa
gttgtcctacatgaagacaaaaaatattatcccacaccagaggaggtgtatggacctgaa
gtggagacaattgtacaggaggaagatacacagcctttgacagagccaatcatagctcca
gtgaagaagaaaaagttttctatggcagaacaagatctgcctgacactgtctacaatatg
gagtttttggctgacttaatggacactcctgaactgatcagaaatgttacactgtgtggc
catctacatcatggaaagacgacctttgttgattgccttgtatcacagacacacccagag
atcaatgtgaaagatgataaagatatcagatacacagacacattgttcacagaaattgag
cgtggagtgagtataaagtcgacccctgtgacactggtactacctgatacaaggaacaag
tcctaccttgttaatgtctttgatacaccaggtcatgtgaatttctctgatgaagttaca
gctgctctgaggatcagtgatggtgcggttatctttgttgatgctgctgatggggtgatg
ttaaacacagagcggtttattaaacatgctatacaggagaagttaccagtctgtgtgtgt
ataaacaagattgacagactgattctagagctgaagttacctccaacagatgcttatttc
aaattgagaaatattttagatgatataaatggaattgtcagtttatacacagaagaagaa
gggggccagcaggtgtcgccactgattggcaatgtctgtttcgccagctcttactacaga
ctgtgctttacactgggctcttttgctaaaatatattcggacacctatggcggaataaat
gaaaaagaatttgcaagaagattatggggagatatatatttcaacagtaaaacgcgaaag
tttagcaagaaaccaccaaacagctcagcacagaggagtttcgtagagttcattctagaa
ccactgtataaaatatttgcacagattgtaggtgacgtagacagcagtttaccaagggtt
tgtgatgagctgggtatctcccttaccagtgaggaaaagaaactcaacatcagacctctc
atgagaatcgtctgtcgaaggttctttggtgacttcacaggctttgtggacatgtgtgtt
gaccatatcagatctccgctggacaatgctagaagtaagatagagcacatatatactgga
ccaatggaatcagatctcgtagatatgatggtgcaatgtgactctgatggtccacttatg
gtacatacaacaaagttataccccacccaagatgctacatgctttcatgtgtttggtcgt
gtcattagcgggacactgtatgctaaccaggaagtgaggattctgggagaaaactacaca
ttacaggacgaggaagactcaaggttcggtcagattggcagactttggatctcagaagcc
aggtataagatagaggtgaacagggtaccagctgggaactggatccttattgaaggcatt
gatcagcctattgtaaaaacagcgacaattacagacacttcagctccagaggaggttcac
atatttagaccattaaagttcaacacaagttcagtaatcaaaatagctgtggagccagtg
aacccatcagagttacctaaaatgttggatggtctgaggaaagtcaacaagagttatcca
cttgttacaacaaaggttgaagagtctggtgaacacattattctggggactggagagtta
tatcttgattgtgtgatgcatgatcttagaaaaatgtactcagaaatagatataaaagtg
gcagaccctgttgtgtcattctgtgaaactgtagtagaaacttcatcattgaaatgtttt
gctgaaactccaaacaaaaagaataagttaacaatgattgccgagccgctagagaaaggc
ttagctgaggatattgagaatgaagtggtacagatcacatggccaagaaaacgtctcgga
gaattcttccagactaagtacgactgggatcttctagctgccagatctatatgggcattt
ggaccagatgctacaggaccaaatatccttgtagacgataccttaccttctgaagtggac
aagagtttgttaggagctgtaaaggatagtattgtacagggattccagtgggccaccagg
gaaggtcctctatgtgatgaaccgatccgtaatgtaaaatttaagatcctagatgcagtg
atagcccaggaacccatacacagaggtgggggacagattatacccacagctagaagagta
gcttactcagcattccttatggcgaccccgaggatgatggaaccttactactttgtagaa
gtactggcaccagctgattgtgtgtcagcagtgtacacagtgttagccagaagaagaggg
catgttacacaagattccccagtacctggatctccgttatataccattaaagctttcctg
ccagccatcgactcttttgggtttgagacagatctaagaacacacacgcagggtcaggca
ttctgtctgtcagtgttccatcattggcagatagtccctggtgatcccctagacaagagt
atacacatccgacccctggaggcccagccggcaacacatctagccagagagtttatggtc
aagactagaaggagaaagattctacatatcctccaccatgattgtgagaggggagataca
cagtccattcaatctgacaaatggctaaatggaatgtaa
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