Mercenaria mercenaria (northern quahog): 128546984
Help
Entry
128546984 CDS
T07835
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128546984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmer03041
]
128546984
Spliceosome [BR:
mmer03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128546984
Complex C
U5 SnRNP specific factors
128546984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
EFL1
Roc
MMR_HSR1
Septin
Motif
Other DBs
NCBI-GeneID:
128546984
NCBI-ProteinID:
XP_053374428
LinkDB
All DBs
Position
11:complement(6143626..6254195)
Genome browser
AA seq
977 aa
AA seq
DB search
MDGDLYDEFGNYIGPELDSDDDDDSDDSGDQDDVEKYPDYGGADEEEAMDQDEEDASDMQ
VVLHEDKKYYPTPEEVYGPEVETIVQEEDTQPLTEPIIAPVKKKKFSMAEQDLPDTVYNM
EFLADLMDTPELIRNVTLCGHLHHGKTTFVDCLVSQTHPEINVKDDKDIRYTDTLFTEIE
RGVSIKSTPVTLVLPDTRNKSYLVNVFDTPGHVNFSDEVTAALRISDGAVIFVDAADGVM
LNTERFIKHAIQEKLPVCVCINKIDRLILELKLPPTDAYFKLRNILDDINGIVSLYTEEE
GGQQVSPLIGNVCFASSYYRLCFTLGSFAKIYSDTYGGINEKEFARRLWGDIYFNSKTRK
FSKKPPNSSAQRSFVEFILEPLYKIFAQIVGDVDSSLPRVCDELGISLTSEEKKLNIRPL
MRIVCRRFFGDFTGFVDMCVDHIKSPLDNARSKIEHIYTGPMESDLVDMMVQCDSDGPLM
VHTTKLYPTQDATCFHVFGRVISGTLYANQEVRILGENYTLQDEEDSRFGQIGRLWISEA
RYKIEVNRVPAGNWILIEGIDQPIVKTATITDTSAPEEVHIFRPLKFNTSSVIKIAVEPV
NPSELPKMLDGLRKVNKSYPLVTTKVEESGEHIILGTGELYLDCVMHDLRKMYSEIDIKV
ADPVVSFCETVVETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIENEVVQITWPRKRLG
EFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGAVKDSIVQGFQWATR
EGPLCDEPIRNVKFKILDAVIAQEPIHRGGGQIIPTARRVAYSAFLMATPRMMEPYYFVE
VLAPADCVSAVYTVLARRRGHVTQDSPVPGSPLYTIKAFLPAIDSFGFETDLRTHTQGQA
FCLSVFHHWQIVPGDPLDKSIHIRPLEAQPATHLAREFMVKTRRRKGLSEDVSINKFFDD
PMLLELAKQDVLLSYPM
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggatggagacctatatgatgagtttggtaactatataggtccagaattagacagtgat
gatgatgatgacagtgatgattcaggagatcaggatgatgttgagaaataccctgactat
ggaggagctgatgaggaggaggcaatggaccaggatgaagaagatgcctcagacatgcaa
gttgtcctacatgaagacaaaaaatattatcccacaccagaggaggtgtatggacctgaa
gtggagacaattgtacaagaggaagatacacagcctttgacagagccaatcatagctcca
gtgaagaagaaaaagttttctatggctgaacaagatctgcctgacactgtctacaatatg
gagtttttggccgacttaatggacactcctgaactgatcagaaatgttaccctgtgtggc
cacttacatcatggaaagacgacctttgttgattgccttgtatcacagacacacccagag
atcaatgtgaaagatgataaagatatcagatacacagacacattgttcacagaaattgag
cgtggagtgagtataaagtcgacgccggtgacactggtactacctgatacaaggaacaag
tcctaccttgttaatgtctttgatacaccaggtcatgtgaatttctctgatgaagttaca
gctgctctgaggatcagtgatggtgcggtcatctttgttgatgctgctgatggggtgatg
ttaaacacagagcggtttattaaacatgctatacaggagaagttaccagtctgtgtgtgt
ataaacaagattgacagactgattctagagctgaagttacctccaacagatgcttatttc
aaattgagaaatattttagatgatataaatggaattgtcagtttatacacagaagaagaa
ggtggccagcaggtgtcgccactgattggcaatgtctgtttcgccagctcttactacaga
ctgtgctttacactgggctcttttgctaaaatatattctgacacctatggcggaataaat
gaaaaagaatttgcaagaagattatggggagatatatatttcaacagtaaaacgcgaaag
tttagcaagaaaccaccaaacagctcagcacagagaagcttcgtagagttcattctagaa
ccattgtataaaatatttgcacagattgtaggtgatgtagacagcagtttaccaagggtt
tgtgatgagctgggtatctcccttaccagtgaggaaaagaaactcaacatcagacctctc
atgagaatcgtctgtcgaagattctttggtgacttcacgggctttgtggacatgtgtgtt
gaccatatcaaatctccgctggacaatgctagaagtaagatagagcacatatatactgga
ccaatggaatcagatctcgtagatatgatggtgcaatgtgactctgatggtccacttatg
gtacatacaacaaagttataccccacccaagatgctacatgctttcatgtgtttggtcgt
gtcatcagcgggacactgtatgctaaccaggaagtgaggattctgggagaaaactacaca
ttacaggatgaggaagactcaaggttcggtcagattggcagactttggatctcagaagcc
aggtataagatagaggtgaacagggtaccagctgggaactggatccttattgaaggcatt
gatcagcctattgttaaaacagcgacaattacagacacttcagctccagaggaggttcac
atattcagaccattaaagttcaacacaagttctgtaatcaaaatagctgtggagccagtg
aacccatcagagttacctaaaatgttggacggtcttaggaaagttaacaagagttatcca
cttgttacaacaaaggttgaagagtctggtgaacacattattctggggactggagaactc
tatcttgactgtgtgatgcatgatcttagaaaaatgtactcagaaatagatataaaagtg
gcagaccctgttgtgtcattctgtgaaactgttgtagaaacttcatcattgaaatgtttt
gctgaaactccaaacaaaaagaataagttaacaatgattgccgagccgctagagaaaggc
ttagctgaggatattgagaatgaagtggtacagatcacatggccaagaaaacgtctcgga
gaattcttccagactaagtacgactgggatcttctagctgccagatctatatgggcattt
ggaccagatgctacaggaccaaatatccttgtagacgatactttaccttctgaagtggac
aagagtttgttaggagctgtaaaggatagtattgtacagggattccagtgggccaccaga
gaaggtcctctatgtgatgaaccaatccgtaatgtcaagtttaagatcctagatgcagtg
atagcccaggagcccatacacagaggtgggggacagattatacccacagctagaagagta
gcttactcagcattccttatggcgaccccaaggatgatggaaccttactactttgtagaa
gtactggcaccagctgattgtgtgtcagcagtgtacacagtgttagccagaagaagaggg
catgttacacaagattccccagtacctggatctccgttatataccattaaagctttcctg
ccagccatcgactcttttgggtttgagacggatctaagaacacacacgcagggtcaggca
ttctgtctgtcagtgtttcatcattggcagatagtccctggtgatcccctagacaagagt
atacacatccgacccctggaggcccagccggcaacacatctagccagagagtttatggtc
aagactagaaggagaaagggtttgagtgaagacgttagtatcaacaagttctttgacgat
cctatgttgttggagttggcaaaacaagatgtgctgctcagttatcctatgtag
DBGET
integrated database retrieval system
