Mycobacterium tuberculosis variant microti: RN08_3327
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Entry
RN08_3327 CDS
T04291
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmic
Mycobacterium tuberculosis variant microti
Pathway
mmic03030
DNA replication
mmic03410
Base excision repair
mmic03420
Nucleotide excision repair
mmic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RN08_3327
03410 Base excision repair
RN08_3327
03420 Nucleotide excision repair
RN08_3327
03430 Mismatch repair
RN08_3327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmic03032
]
RN08_3327
03400 DNA repair and recombination proteins [BR:
mmic03400
]
RN08_3327
Enzymes [BR:
mmic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RN08_3327
DNA replication proteins [BR:
mmic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RN08_3327
DNA repair and recombination proteins [BR:
mmic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RN08_3327
NER (nucleotide excision repair)
GGR (global genome repair) factors
RN08_3327
MMR (mismatch excision repair)
DNA ligase
RN08_3327
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RN08_3327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AMC60754
LinkDB
All DBs
Position
complement(3364559..3366634)
Genome browser
AA seq
691 aa
AA seq
DB search
MSSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPE
LRTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAHYLC
ELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLE
VRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGH
VEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVK
VDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAG
STVGQATLHNASEIKRKGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPE
CGSPLAPEKEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAKVIA
DEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPT
AARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRM
VDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPG
SKYDKAVELGVPILDEDGFRRLLADGPASRT
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgagctccccagacgccgatcagaccgctcccgaggtgttgcggcagtggcaggcactg
gccgaggaggtgcgtgagcaccagttccgttattacgtgcgggacgcgccgatcatcagc
gacgcggaattcgacgagctgctgcgccgtctggaagccctcgaggagcagcatcccgag
ctgcgcacgcccgattcgccgacccagctggtcggcggtgccggcttcgccacggatttc
gagcccgtcgaccatctcgaacgaatgctcagcctcgacaacgcgttcaccgccgacgaa
ctcgccgcctgggccggccgcatccatgccgaggtcggagacgccgcacattacctgtgt
gagctcaagatcgacggcgtcgcgctgtctttggtctaccgcgagggacggctgacccgg
gcctccacccgcggcgacgggcgcaccggcgaggacgtcaccctgaacgcccggaccatc
gccgacgttcccgaacggctcacccccggcgacgactacccggtgcccgaggtcctcgag
gtccgcggcgaggtcttcttccggctggacgacttccaggcgctcaacgccagcctcgtc
gaggagggcaaggcgccgttcgccaacccccgcaacagcgcggcgggatcgctgcgccag
aaagacccggcggtcaccgcgcgccgccggctgcggatgatctgccacgggctgggccac
gtggagggctttcgcccggccaccctgcatcaggcatacctggcgttgcgggcatgggga
ctgccggtttccgaacacaccaccctggcaaccgacctggccggtgtgcgcgagcgcatc
gactactggggcgagcaccgccacgaggtggaccacgaaatcgacggcgtggtggtcaaa
gtcgacgaggtggcgttgcagcgcaggctgggttccacgtcgcgggcgccgcgctgggcc
atcgcctacaagtacccgcccgaggaagcgcagaccaagctgctcgacatccgggtgaac
gtcggccgcaccgggcggatcacgccgtttgcgttcatgacgccggtgaaggtggccggg
tcgacggtgggacaggccaccctgcacaacgcctcggagatcaagcgcaagggcgtgctg
atcggcgacaccgtggtgatccgcaaggccggcgacgtgatccccgaggtgctgggaccc
gtcgtcgaactgcgcgatggctccgaacgcgaattcatcatgcccaccacctgcccggag
tgcggttcgccgttggcgccggagaaggaaggcgacgccgacatccgttgccccaacgcc
cgcggctgcccggggcaactgcgggagcgggttttccacgtcgccagccgcaacggccta
gacatcgaggtgctcggttacgaggcgggtgtggcgctcttgcaggcgaaggtgatcgcc
gacgagggcgagctgttcgcgctgaccgagcgggacttgctgcgcaccgacctgttccga
accaaggcaggcgaactgtcggccaacggcaaacggctgctggtcaacctcgacaaggcc
aaggcggcaccgctgtggcgggtgctggtggcgctgtccatccgccatgtcgggccgacg
gcggcccgcgccctggccaccgagttcggcagccttgacgccatcgccgcggcgtccacc
gaccagctggccgccgtcgagggggtggggccgaccattgccgccgcggtcaccgagtgg
ttcgccgtcgactggcaccgcgagatcgtcgacaagtggcgggccgccggggtgcgaatg
gtcgacgagcgtgacgagagtgtgccacgcacgctggccgggctgaccatcgtggtcacc
ggctcgctgaccggtttctcccgtgacgacgccaaggaggcgatcgtggcccgcggcggc
aaggccgccggctcggtgtcgaagaagaccaactatgtcgtcgccggagactcgccggga
tccaaatacgacaaggcggtggagttgggggtgccgattctggacgaggatgggttccgg
agactgctggccgacggacccgcgtcacgaacgtaa
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