Mycolicibacter minnesotensis: MMIN_04360
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Entry
MMIN_04360 CDS
T06638
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmin
Mycolicibacter minnesotensis
Pathway
mmin03030
DNA replication
mmin03410
Base excision repair
mmin03420
Nucleotide excision repair
mmin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MMIN_04360 (ligA)
03410 Base excision repair
MMIN_04360 (ligA)
03420 Nucleotide excision repair
MMIN_04360 (ligA)
03430 Mismatch repair
MMIN_04360 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmin03032
]
MMIN_04360 (ligA)
03400 DNA repair and recombination proteins [BR:
mmin03400
]
MMIN_04360 (ligA)
Enzymes [BR:
mmin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MMIN_04360 (ligA)
DNA replication proteins [BR:
mmin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MMIN_04360 (ligA)
DNA repair and recombination proteins [BR:
mmin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MMIN_04360 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MMIN_04360 (ligA)
MMR (mismatch excision repair)
DNA ligase
MMIN_04360 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MMIN_04360 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BBY32375
LinkDB
All DBs
Position
complement(419142..421235)
Genome browser
AA seq
697 aa
AA seq
DB search
MVSPEADSVTPDLRRQWHDLAEEVREHQFRYYVKDAPIITDGEFDQLFNRLLALEEAHPE
LRTADSPTQLVGGAGFTTEFAPAEHLERMLSLEDVFSPDELTAWAGRVTGEIGGDTSYLC
ELKVDGVALGLVYRNGRLSSGATRGDGRVGEDVTLNARTIIDIPEYLNTDTEFPIPAVLE
VRGEVYFRLEDFEALNAGLVAEGKPPFANPRNSAAGSLRQKNPAITARRNLRMVCHGLGF
ADGFNPDTLHDAYAAMKSWGLPVSAHTARVEGMAAVAERISYWGEHRHDVEHEIDGVVVK
VDDRALQRRLGATSRVPRWAVAYKYPPEEAQTTLLDIRVSVGRTGRVTPFAHMSPVKVAG
STVALATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSERPFVMPTHCPE
CGTLLAPAKEADVDIRCPNSQSCPAQLRERVFHVAGRGAFDIEALGYEAATALLAAGAIS
DEGDLFTLTEDDLLRTDLFTTKDGALSKNGRQLLVNLDKAKAQPLWRVLVALSIRHVGPT
AARALATEFGSLAAITAATTEQLAAVEGVGPTIAAAVTEWFDVDWHRAIVDKWRAAGVRM
ADERDESIQRTLEGLSIVVTGSLTGYSRDEAKEAIIARGGRAAGSVSKKTAYVVAGDAPG
SKYDKAIELGVPVLDEQGFVHLLADGPGDPEDPAPQL
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
gtggtgagtccagaggccgacagcgtgaccccggacctcaggcggcagtggcacgacctg
gctgaagaggtccgagaacatcagttccgctactacgtcaaagacgcgccgatcatcacc
gacggcgaattcgaccagttgttcaaccggctcctcgcattggaagaagcacatccggaa
ctgcgcaccgccgattcgccgactcagctggtaggcggcgccgggttcaccacggagttc
gcgcccgccgagcatctggagcgcatgctgtctttggaagatgtcttctcgcccgatgag
ctgacggcgtgggctggccgggtcactggtgagatcggcggcgacaccagctatctgtgt
gaactcaaggtcgacggcgtggcgctcgggctggtgtatcgcaacggccggttgagcagc
ggcgccacccgcggcgatggccgggtcggtgaggacgtcacgctgaacgcgcgcaccatc
atcgacatccccgaatacctcaacacggacaccgaattcccgatcccggccgtgctggag
gtacgcggcgaagtctacttccggctggaagacttcgaagccctcaacgccgggctggta
gccgaaggaaagccgccgtttgccaacccccgcaacagtgcggctggatccctgcggcag
aagaaccccgcgatcaccgcccggcgcaacctgcgcatggtctgtcacggactgggtttc
gccgacggcttcaaccctgacaccctgcacgacgcctacgccgcgatgaaatcctggggc
ctgccggtatcagcccataccgcgcgtgtcgaaggtatggccgcagtggccgagcgcatc
agctactggggcgaacaccgccacgacgtggagcacgaaatcgacggtgtggtggtcaaa
gtcgatgaccgcgcattgcagcgccggctcggcgctacctcgcgggtgccacgttgggcg
gtggcctacaagtacccgcccgaggaggcccagaccaccctgctcgacatccgagtcagc
gtcgggcgcaccggacgggtcacgccgttcgcacacatgtccccggtcaaggtcgccggt
tccacggtggcgctggccacgttgcacaacgcctcggaagtcaagcgcaaaggcgtgctg
atcggggataccgtggtgattcgcaaggccggagatgtcattcccgaggtactcggaccc
gtggtcgacctccgcgacggcagtgagcgccccttcgtcatgccgacccactgtccggaa
tgcggaactctgttggcgccggcgaaggaagccgacgtcgatattcgctgtcccaattcc
cagtcctgcccggcgcagctgcgcgagcgggtgtttcatgtggctggccgtggggcgttc
gacatcgaagcgttgggttatgaggcggcaacggcgctgttggcggccggggcaatcagc
gatgagggtgatctgttcacgctcaccgaagacgacctgctgcgcaccgacctgttcacc
accaaggacggcgcgctgtcgaagaacggtcggcagctgctggtcaacctcgacaaggcc
aaggcgcaaccgctgtggcgggtattggtggcgttgtcgatccgtcacgtgggcccgacc
gcggcgcgggccctggctaccgaattcggcagtctggctgccatcacggcggccaccacc
gagcagttggccgctgttgaaggcgtcggaccgaccatcgccgcggcggtcaccgaatgg
ttcgacgtcgactggcatcgtgcgatcgtcgacaaatggcgggccgcgggcgtgcggatg
gccgatgagcgagacgagagcatccagcgcaccctggaggggctcagcattgtggtgacc
ggctcgctgaccggctactcgcgtgatgaggccaaggaggcgatcatcgcccgcgggggc
cgggcggcgggctcggtgtcgaagaagaccgcctatgtggtggccggcgatgcgcccggc
tcgaagtacgacaaggccatcgagctcggggtcccggtcctggacgaacagggtttcgtc
cacctgctggccgacgggccgggggatcccgaggacccggcgccgcagctctag
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