Mycoplasma mycoides subsp. capri LC 95010: MLC_7120
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Entry
MLC_7120 CDS
T01478
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mml
Mycoplasma mycoides subsp. capri LC 95010
Pathway
mml03030
DNA replication
mml03410
Base excision repair
mml03420
Nucleotide excision repair
mml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MLC_7120 (ligA)
03410 Base excision repair
MLC_7120 (ligA)
03420 Nucleotide excision repair
MLC_7120 (ligA)
03430 Mismatch repair
MLC_7120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mml03032
]
MLC_7120 (ligA)
03400 DNA repair and recombination proteins [BR:
mml03400
]
MLC_7120 (ligA)
Enzymes [BR:
mml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MLC_7120 (ligA)
DNA replication proteins [BR:
mml03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MLC_7120 (ligA)
DNA repair and recombination proteins [BR:
mml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MLC_7120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MLC_7120 (ligA)
MMR (mismatch excision repair)
DNA ligase
MLC_7120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MLC_7120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
Nlig-Ia
PTCB-BRCT
RNA_ligase
5_3_exonuc
PTSIIA_gutA
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
CBW54442
UniProt:
F4MQQ9
LinkDB
All DBs
Position
complement(889155..891161)
Genome browser
AA seq
668 aa
AA seq
DB search
MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITSDSP
SQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQVSKVSNTLDNQYVAELKIDGL
SISLVYENGSLVSAATRGNGVVGEDVTINVKTIKSIPLKINKKERVEVRGEIYLSKAEFE
KINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNNLTQYQSIL
KLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKNLQNSLGFTS
KIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGATISAATLNNAEYI
KSKDLRINSIVKIKKAGDVIPEVIEAIKDETFYNLEKFKPILYCPNCHSLLEKNENEVDQ
FCINSSCSMKILRSLQHFSSREAMNIVSLGDRSLEILFNLNIIKTISDIYRLEEYKDQIL
EIENFGLKSYLNLIDSINMSKNNSLEKVLFGLGIRHIGSKTAKILARKYQNIDNLMKASY
DELIQINSIGESLALSIIDWFRIEDNLKLINELKSFNINFNYLGAKINSDSIIANKSFVI
TGTLTRPREEFKTLIENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVTIIDEQQFF
DLLKSEKG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagataaagctttattaagaattaatcaattaaaagaacaactgaacttatga
tcaaaacaatattatgttgatgataatccaagtgttgatgatattgaatatgatctagct
ttaaaagaattaattagtttagaaactttatatccagaattaattacaagtgattcacca
agtcaaaaagttggtggaatggttagtgaaaagtttttaaaaatcactcataaaacacca
atgttaagtttaggtaatgtttttagttttgatgagtttttagattttaatactcaagta
agtaaagtttcaaatactttagataatcaatatgttgctgaattaaaaattgatggttta
tcaatttcattagtttatgaaaatggaagcttagtttcagctgcaactagaggtaatggt
gttgttggtgaagatgttactattaatgtaaaaacaattaaatcaattcctttaaaaatc
aataaaaaagaacgtgttgaagttagaggagaaatttatttatctaaagccgaatttgaa
aaaattaatcaaaaaagattgttaaataatgaagatctatttataaatcctagaaatgca
gctgcaggtactttaagacaattagattcaaaaatagttgcaagtagaaatttagatgct
tttttatattattacattagtgatgattcaaataatttaactcaatatcaatcaatttta
aaattaaatgaattaggttttaaaactaataaagaaacaatgctatgtaaaaatttagat
gaaattaaagcatatattgataaatatactaatttaaaaaatgatttagattatcaaatt
gatggaattgtttttaaaattaatgataaaaatttacaaaatagtttaggatttactagt
aagattccaaaatgagcaattgcttataagtttccagctgaaattaagcaaactaaatta
ttagatatatttgcaaccgttggaagaactggaaaaattacttataatgctaaattagag
cctgtttttttaatgggagctacaattagtgctgctactttaaataatgcagaatatatt
aaatcaaaagatttaagaattaatagtatagttaaaataaaaaaagctggagatgttatt
ccagaagttattgaagctattaaagatgaaactttttataatttagaaaaatttaaacct
atattatattgtccaaattgtcattctttattagaaaaaaatgaaaatgaagttgatcag
ttttgtataaattcttcttgttctatgaaaatattaagatcattacaacattttagtagc
agagaagctatgaatattgtaagcttaggagatagaagtttagaaattttatttaattta
aatattattaaaactatttcagatatttatagattagaagaatataaagaccaaatttta
gaaattgaaaactttggtttaaaaagctatttgaatttaattgattcaattaatatgtct
aaaaataattctttagaaaaagttttatttggtttgggaattagacatattggaagtaaa
actgcaaaaattttagctagaaaatatcaaaatatagataatttaatgaaagctagttat
gatgaattaattcaaataaattcaattggagaatcattagctttatctattattgattga
tttagaatagaagataatttaaaactaattaatgagttaaaatcatttaacattaatttt
aattatttaggagcaaaaattaattctgattcaataattgctaataagtcatttgtaatt
actggaactttaacaagaccaagagaagaatttaaaacactaattgaaaataatgcaggt
aaagtaattggatctatttctaaacaaactgattatttattagctggtaacaatgtgggt
tctaaactagaaaaagcaaaaaaattaggtgttacaattatagatgaacaacaatttttt
gatttattaaaatcagagaaaggataa
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