Mycobacterium sp. MOTT36Y: W7S_18455
Help
Entry
W7S_18455 CDS
T02113
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmm
Mycobacterium sp. MOTT36Y
Pathway
mmm03030
DNA replication
mmm03410
Base excision repair
mmm03420
Nucleotide excision repair
mmm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
W7S_18455 (ligA)
03410 Base excision repair
W7S_18455 (ligA)
03420 Nucleotide excision repair
W7S_18455 (ligA)
03430 Mismatch repair
W7S_18455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmm03032
]
W7S_18455 (ligA)
03400 DNA repair and recombination proteins [BR:
mmm03400
]
W7S_18455 (ligA)
Enzymes [BR:
mmm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
W7S_18455 (ligA)
DNA replication proteins [BR:
mmm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
W7S_18455 (ligA)
DNA repair and recombination proteins [BR:
mmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
W7S_18455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
W7S_18455 (ligA)
MMR (mismatch excision repair)
DNA ligase
W7S_18455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
W7S_18455 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AFJ36646
LinkDB
All DBs
Position
complement(4082692..4084773)
Genome browser
AA seq
693 aa
AA seq
DB search
MSSAEADSVAPEVRRQWQDLAEAVREHQFRYYIKDAPIISDAEFDSMFTELLALEERHPE
LRVADSPTQLVGGAGFATDFAEAQHLERMLSLDDVFDRDELVAWSNRVENEVGKEPHYLC
ELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSAGKDFPTPSLLE
VRGEVFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGR
TEGFAPKTQHEAYAALKAWGLPVAEQTARVRGLAAVEERIGYWGEHRYDLEHEIDGVVVK
VDDVALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG
STVGLATLHNAAEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPE
CDTPLAPAKEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIEGLGYEAAIALLKADVIA
DEGDLFTLTEDDLLRTELFRTKAGTLSANGRRLLDNLDKAKKVALWRVLVALSIRHVGPT
AARALATEFGDLDAIMSASTERLAAVEGVGPTIAAALTEWFTVDWHRAIVDKWRAAGVRM
ADERDTSVPRTLEGLTVVVTGSLAGFSRDDAKEAILARGGKAAGSVSKKTDYVVAGDSPG
SKYDKAVELGVPVLDEDGFRRLLADGPQKTPAE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcagcagaagctgattcggtagcgcccgaggtccggcggcagtggcaggacctt
gccgaagcggtccgggaacaccagttccgctactacatcaaggacgcgccgatcatctcg
gacgccgaattcgactcgatgttcaccgagctcctcgcgctggaggagcgccacccggag
ctgcgggtcgccgattcgccgacccagctggtcggcggcgcgggcttcgccaccgacttc
gccgaggcgcagcacctggaacgcatgctgagcctcgacgacgtcttcgaccgcgacgag
ctggtggcctggagcaaccgcgtcgagaacgaggtcggcaaggaaccgcattacctgtgc
gaactcaagatcgacggggtggcgctgtcactggtgtaccgcgacggccggctggaacgc
gccgcgacccgcggcgacgggcgcgtcggtgaggacgtgacgctcaacgcgcgcaccatc
gacgacgttcccgagcggctgtccgccggcaaggacttcccgacgccgtccctgctggag
gtgcgcggcgaggtgttcttcctgctcgccgatttcgaggcgctcaacgccagcctggtc
gaggacggcaaggccccgttcgccaacccgcgcaacagcgccgccgggtcgctgcgccag
aagaacccggccgtcaccgcccggcgcaagctgcggatgatctgccacggcatcggccgc
accgaagggttcgccccgaagacccagcacgaggcctacgccgcgctgaaggcctggggg
ctgccggtggccgaacagacggcacgcgtgcgcggcctcgccgcggtcgaggagcggatc
ggctactggggagagcaccgctacgacctcgagcacgagatcgacggcgtggtggtcaaa
gtcgacgacgtcgcgttgcagcgccggctcggcaccacgtcgcgcgcgccgcgctgggcc
gtcgcctacaagtatccgccccaggaggcgcagaccaagctgctcgacatccgcgtcaac
gtcgggcgcaccgggcgcgtcacgccctttgccttcatgacgccggtgaaggtggccggg
tccaccgtcgggctggccaccctgcacaacgccgccgaggtcaagcgcaagggcgtgctg
atcggcgacaccgtgatgatccgcaaagccggcgacgtcatcccggaggtgctgggcccc
gtcgtcgacctgcgcgacggctccgaacgcgaattcgtcatgcccacaacgtgtcccgag
tgcgacaccccgctggcaccggccaaggagggcgacgccgacatccgctgccccaatgcc
cggtcctgcccggcgcaactgcgggagcgggtgttccacgtcgccggtcgcggggcgttc
gacatcgaggggctcggctacgaggccgccatcgcgctgctcaaggccgacgtgatcgcc
gacgagggcgacctgttcacgctgaccgaggacgacctgttgcgcaccgagctcttccgg
accaaggcgggcaccttgtccgccaacggcagacggctgctcgacaacctggacaaggcc
aaaaaggttgcgctgtggcgggttttggtggcgttgtccatccgccacgtcgggccgacg
gcggcgcgcgccctggcgaccgagttcggcgacctggacgccatcatgtcggcctcgacc
gagcggctcgcggcggtcgagggcgtgggcccgacgatcgccgccgcgctcaccgaatgg
ttcaccgtcgactggcaccgcgcgatcgtcgacaagtggcgcgccgccggcgtgcggatg
gccgacgagcgcgacaccagcgtgccgcgcaccctggagggcctgacggtggtggtcacc
gggtccctcgccggcttttcgcgcgacgacgccaaggaggcgatcctggcgcgcgggggc
aaggccgccgggtcggtgtcgaagaagacagactacgtcgtggccggggattcgccgggg
tcgaaatacgacaaggccgtcgagctgggggtgcccgtcctcgacgaggacggcttccgg
cggctgctggccgacggtccgcaaaaaacaccggcggaataa
DBGET
integrated database retrieval system
