KEGG   Marmota marmota marmota (Alpine marmot): 107139648
Entry
107139648         CDS       T09644                                 
Name
(RefSeq) DNA dC->dU-editing enzyme APOBEC3-like
  KO
K18750  C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
mmma  Marmota marmota marmota (Alpine marmot)
Pathway
mmma03250  Viral life cycle - HIV-1
mmma05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:mmma00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    107139648
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    107139648
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmma03019]
    107139648
Messenger RNA biogenesis [BR:mmma03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107139648
SSDB
Motif
Pfam: NAD2 APOBEC2 NAD1 APOBEC_N APOBEC3 SNAD4 APOBEC_C APOBEC4_like APOBEC4 APOBEC1 dCMP_cyt_deam_1 MafB19-deam AID
Other DBs
NCBI-GeneID: 107139648
NCBI-ProteinID: XP_048663854
LinkDB
Position
Unknown
AA seq 534 aa
MALEVTHRSIRGLPRQRPWNQEMEPQNRRPGACPGCHNPAPDIRNKISRLYRKTFLFHFR
NLRWALGRNNTFLCYQVDREERDSTVPIHRGVFKTQVFLETRLHAELCFLYWLHDYPLQF
PDQHLQITWFISWSPCSDCAQQVAAFLASHSNLSLTIYAARLYYFWNHSYQEGLRALQRE
GARVEIMSLREFEHCWENFVYPYDGRPFRPWKNLIRNYHFQVKKLQKIGWGGPRGQSQGW
TVRVEGRHWARSEGEATHCHSSWWPCSFPPCSFPPCSSVISLRDPGTTELTPEGRGHLSP
AQVTPEEAPGSWCLLVTRRVMKLLKKETFHQQFNNQHRAPRPYCRRKTYLCYQLQLKGSP
CDQDYFQNKKDRHAEIRFIKKIRSLDLDRSQNYEVTCYLTWSPCPNCAQELVELTRSHPH
VRLRLFTSXXXXXXLWRFQEGLRLLWRSGVQIWVMSLREFTHCWVKFVNHEGCPFEPELW
DRLEQRSQSIQNRLNRILGLTPVTATCATSCPYPCCSAVLSLEDLTANFRNLQL
NT seq 1605 nt   +upstreamnt  +downstreamnt
atggccctggaggtcactcacagatcgatcagggggcttccaaggcaaaggccctggaat
caggaaatggagccccagaaccggagacccggggcctgcccaggatgccacaacccagcc
ccagacatcagaaacaagataagtcgtttatatcgaaagacattcctcttccacttccgg
aatcttcgctgggccctgggccggaacaacaccttcctgtgctaccaggtggatagagag
gagcgtgactcaactgtccccattcacagaggggtctttaaaacccaggtcttcctggag
acccgcctgcatgccgagctgtgcttcctctactggctgcacgactaccccctgcagttc
cccgaccagcacttacagatcacctggttcatctcctggagtccctgctctgactgtgca
cagcaggtggccgccttcctggccagccactccaacttgagcttgaccatctacgccgcc
cgcctctattacttctggaatcactcataccaagaggggcttcgcgccctgcagcgggaa
ggagccagggtggaaatcatgtccctcagagagtttgagcactgttgggagaactttgtg
tacccctacgacggacggccattccggccttggaagaacctgattagaaattaccacttc
caggtcaagaagctgcagaagattggatggggtggccccagaggacagtctcaaggctgg
actgtgagagtggaggggaggcactgggcacggtcagagggagaagccacccactgccac
agctcctggtggccctgctccttccctccctgctccttccctccctgctcctctgtcatc
tccctcagggacccaggcaccacagagttgactcctgaaggcagaggccatctgagccca
gcgcaggtgactccagaggaagctcccggctcctggtgcctccttgtcacacggagggtc
atgaagctgctaaagaaagaaacgttccaccagcagtttaacaaccagcaccgggcgccc
aggccctactgccgccggaagacctacctgtgctaccagctgcagctcaagggctccccg
tgtgaccaggactactttcaaaacaagaaggatcgccacgcagagattcgcttcataaag
aagatccgttccttggacctggaccggagccagaactacgaagtcacctgctacctcacc
tggagcccctgccccaactgcgcccaggagctggtggagctcacacgaagccacccccac
gtgcggctgaggctcttcacctcnnnnnnnnnnnnnnnnnngctctggagatttcaggaa
gggctgcggctcctgtggagatccggggttcagatctgggtcatgagtctccgagagttc
acccactgctgggtcaagtttgtgaaccacgagggatgtccctttgagcctgagctctgg
gacaggctggagcaacgcagccaaagcatacaaaatcgcctcaatcgcatcctggggttg
acacctgtcactgccacctgtgccacctcctgtccctacccatgctgctcagcagtcctg
agtctggaggatcttacagctaacttcaggaacctgcagctttga

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