Marmota marmota marmota (Alpine marmot): 107156416
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Entry
107156416 CDS
T09644
Symbol
Kdm2b
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
107156416 (Kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmma03000
]
107156416 (Kdm2b)
04121 Ubiquitin system [BR:
mmma04121
]
107156416 (Kdm2b)
03036 Chromosome and associated proteins [BR:
mmma03036
]
107156416 (Kdm2b)
Enzymes [BR:
mmma01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
107156416 (Kdm2b)
Transcription factors [BR:
mmma03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
107156416 (Kdm2b)
Ubiquitin system [BR:
mmma04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
107156416 (Kdm2b)
Chromosome and associated proteins [BR:
mmma03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
107156416 (Kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
107156416 (Kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
107156416
NCBI-ProteinID:
XP_015357958
Ensembl:
ENSMMMG00000001364
LinkDB
All DBs
Position
Unknown
AA seq
1305 aa
AA seq
DB search
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLIFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRESMFV
DAPRKASIDGFSSDSWLDMEEESCEQQPQEEEKEEEGDGADKVPKLPADGPASPTSTPSE
EQENLGKKPKAPAMQFLKRTLSNESEDSVKSTTMPIDYPKTPSGSPATEVSTKWTHLTEF
ELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPNLAITGVPVVSW
PKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKD
MKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICN
EIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLLK
EQKMNRDNKEGPEPVKRRSECEEAPRRRSDEHPKKVPPDGILRRKSDDVHLRRKRKYEKP
QELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKR
RSWKNSEDRMANKPLRRFKQEPEDDLPEVPPKTRESDHSRSSSPTAGPSNEGAEGPEEKK
KVKMRRKRRLPNKELSKELSKELNHEIQKTESSLAHENHQPIKSEPESENEEPKRPLGLC
ERPHRFSKGLNGTPRELRHPLGPSLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPISPP
PDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCK
SITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSS
CPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDVSLR
LIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKR
CGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgcccgattgatcgccagagatacgac
gagaacgaagacttgtcggacgtggaggagattgtcagcgtccgcggattcagcctggaa
gagaagctgcgcagccagctgtaccagggggacttcgtgcacgccatggagggcaaagat
ttcaactatgagtacgtacagagagaagctctcagggttcccctgatatttcgagaaaag
gacggactaggaattaagatgcctgatcctgatttcacagtccgagatgtcaaactccta
gtggggagccggcggctggtagatgtgatggacgtgaacacccagaaaggcacggagatg
agcatgtcccaattcgtgcgctactatgagacgcctgaggcacagcgggacaaactgtac
aacgtcatcagcctggagttcagccacaccaagctggagcacctggtcaagcgccccact
gtagtggacctggtggactgggtggacaatatgtggccccagcacctgaaggagaagcag
acggaagccaccaacgccatcgcagagatgaagtacccgaaagtaaagaagtattgtctg
atgagcgtgaagggctgtttcactgatttccacatcgactttggaggcacttccgtgtgg
taccatgttttccggggtgggaagatcttttggctgatcccaccaaccctgcacaacttg
gcgctgtatgaggagtgggtgctgtcaggcaaacagagcgacatcttcctgggagaccgt
gtggaacgatgccaaagaattgagctgaagcagggctacacgtttttcatcccttccggt
tggatccacgcagtctacacccccgtagactccctggtgttcggtgggaacatcctgcat
agcttcaatgtgcccatgcagctgcggatctacgagatcgaggacagaacccgggtgcag
cccaagttccgttaccccttctactatgagatgtgctggtatgtgttggagagatatgtg
tactgtgtgactcagcgctcctacctcactcaggaataccagagagagtccatgttcgtt
gatgccccaagaaaggccagcatagacggcttctcatctgattcctggttggacatggag
gaagagtcctgtgagcagcagccccaggaggaggagaaggaggaggagggggatggggca
gataaggtgcccaagctgccagcggatggccctgcctcccccaccagcaccccctccgag
gagcaggagaaccttggcaagaagcctaaagcacctgccatgcagttcctcaaaaggacc
ttgtccaatgagtcagaggacagcgtgaagtctaccacgatgcccatagactaccccaag
acacccagcggctctcctgccaccgaggtctccaccaaatggacccacctcaccgaattt
gaactgaagggcctgaaagccctggtggagaaacttgagtccctcccagagaacaagaag
tgtgtccccgagggcatcgaggacccccaggccctcctggagggcgtgaagaatgtcctg
aaggaacatgcagatgacgaccctaatctggccatcactggtgtccctgtagtcagttgg
ccaaagaagactccaaagaaccgggcggtgggtcggcccaagggcaagctgggcccagcc
tccgcggtgaaattggccgccaacaggaccacagcaggagctcgcaggcgccggacgcga
tgccgcaagtgcgaggcctgcctgcggaccgagtgcggagagtgccacttctgcaaggac
atgaagaagttcgggggcccagggcggatgaagcagagctgcatcatgcggcagtgcatc
gcgccagtgctgccccacactgctgtgtgtcttgtgtgtggcgaggcggggaaggaggac
acagtggaagaggaagagagcaagtttaacctcatgctcatggagtgctccatctgcaat
gagatcatccaccctggatgccttaagattaaggagtcagagggtgtggtcaacgacgaa
cttccaaactgctgggagtgtcccaagtgtaaccatgccggcaagaccgggaaagcctac
aagcaaaagcgtggccctggctttaaatatgcctccaacctgcctggctccctgctcaag
gagcagaagatgaaccgggacaacaaggaaggaccagagcctgtcaagcggaggagtgag
tgtgaagaggctccccggcgtaggtcagacgagcaccccaagaaggtgccccctgatggc
atcctgcgccgaaaatctgatgatgtacacctaaggaggaagaggaaatatgagaagccc
caagagctgagtggacgcaaacgagcctcgacgcttcaaacgtcccccggttcctcctct
cacctctcgccgaggccccctctaggcagcagcctcagcccttggtggagatccagtctc
acttacttccagcagcagctaaaacctggcaaagaagataaacttttcaggaaaaagcgg
agatcctggaaaaactcagaagaccggatggccaataagcccctccggcgcttcaagcag
gaaccagaggatgatctgcctgaggtgccccccaagaccagggagagtgaccactcacgc
tccagctcgcccacggctgggcctagcaatgagggggccgagggcccagaggagaagaaa
aaggtgaagatgcgccggaaacggcggcttcccaacaaggagctgagcaaggagctgagc
aaggagctcaaccatgagatccaaaagacagagagcagcctggcccatgagaaccaccag
cccatcaagtcagaacctgagagtgagaacgaggaacccaagcggcccctgggcctctgt
gagcgcccccaccgcttcagcaaggggctcaatggcaccccacgggaattgaggcaccca
ttggggcccagcctgcgcagcccaccccgagtcatctcccggcccccaccctccgtgtcc
ccgcccaagtgcatccagatggagcgccacgtgatccggccaccccctatcagcccccca
cccgactcgctgcccctggatgatggggcagcccatgtcatgcacagggaggtgtggatg
gccgtcttcagctacctcagccaccaagacctgtgtgtctgcatgcgggtctgcaggacc
tggaaccgctggtgctgcgataagcggttatggacccgcatcgacttgaaccactgcaag
tccatcacgcccctgatgctgagcggcatcatccggcgacagcctgtctccctcgacctc
agctggaccaatatctccaagaagcagctgagctggctcatcaaccggttgcctgggctc
cgagacttggtgctgtcgggctgctcgtggatcgcagtctcagccctctgtagctccagt
tgtccattgctccggactctggatgtccagtgggtagaaggactaaaggatgcccagatg
cgggatctcctgtctccacctacagataacaggccaggtcagatggacaatcggagtaag
ctccggaacatcgtggagctgcgcctggcagggctggacatcacagatgtctccctgcgg
ctcatcatccgccacatgcccctgctctccaaactccaccttagttattgtaaccacgtc
accgaccagtccatcaacttgcttaccgctgttggcaccaccacccgagactctctaacc
gagatcaacctgtcagactgcaataaggtcactgatcagtgcctgtccttcttcaaacgc
tgtggaaatatctgtcatattgacctgaggtactgcaagcaagtcaccaaggaaggctgt
gagcagttcatagctgaaatgtctgtgagtgtccagtttgggcaagtggaggaaaaactc
ctgcaaaaactgagttag
DBGET
integrated database retrieval system
