Candidatus Midichloria mitochondrii: midi_01121
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Entry
midi_01121 CDS
T01561
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmn
Candidatus Midichloria mitochondrii
Pathway
mmn03030
DNA replication
mmn03410
Base excision repair
mmn03420
Nucleotide excision repair
mmn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
midi_01121 (lig)
03410 Base excision repair
midi_01121 (lig)
03420 Nucleotide excision repair
midi_01121 (lig)
03430 Mismatch repair
midi_01121 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmn03032
]
midi_01121 (lig)
03400 DNA repair and recombination proteins [BR:
mmn03400
]
midi_01121 (lig)
Enzymes [BR:
mmn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
midi_01121 (lig)
DNA replication proteins [BR:
mmn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
midi_01121 (lig)
DNA repair and recombination proteins [BR:
mmn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
midi_01121 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
midi_01121 (lig)
MMR (mismatch excision repair)
DNA ligase
midi_01121 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
midi_01121 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
ERp29
Mustang
DUF4796_N
HHH
Motif
Other DBs
NCBI-ProteinID:
AEI89398
UniProt:
F7XU39
LinkDB
All DBs
Position
complement(1060529..1062556)
Genome browser
AA seq
675 aa
AA seq
DB search
MLSSLESDLKRIEFLRSELKRHNYLYYRLNKPKISDAEYDFLSKELERLEKLHGIEEVDS
PTQTVGGALDVKFKKVAHLRPMLSLGNAFSFSDIADFYERITKVYPEVEFICEPKIDGLS
FSALYQKGKLKYALTRGTGEYGEDITENFKQITAVPQTIDYYEELEIRGEVYIRKDDFMA
LNNERSLKGEEEFANPRNAAAGSLRQLDSNITKERKLRYFVWGGFFEHCVSQSNFLVKAK
ELGFCVNEDIILCKTLEEVNSYYLKMSEKRAALPYDIDGLVYKVNNVKMQQALGRTSKAP
RWAIAHKFPAEGAITQIEDIIVQVGRTGKLTPVALLKPVNVGGVLVSRATLHNEDEIKRK
DFRIGDVVSIKRAGDVIPQVIEVDISKRNGNERIFEFPKNCPVCESSVEQIEGEAAIRCT
GGRNCPAQLLEYLCYFVRKDAFDIIGLGEKQLEEFLEDGLIQEPADIFKIPEVGADILDN
LEKKTGWGKKSIANLLDAIEKSKRIRLDKFIYSLGIRHIGQVNAEIIAKHFRTFENFYGD
LKDNKFDALERINGIGPTMIESIESFFADVKNIKFIEELLQYITIEYMEENDNIYSPLYN
KKIIFTGSLESMARDRAEQISKELGAKIVSSVSKKTDFVIAGSEAGSKLNKAKDLGVQVL
AEQEWLDMINLLRTT
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgttaagtagcctagaaagtgatttaaagcgtattgaatttttacggtctgagctgaaa
agacacaactatctttattatcgattgaataagccgaaaatatcggacgctgagtatgat
ttcttaagcaaggaattagagagactggaaaaattacatggtattgaagaggtggatagc
cctactcaaacagtaggaggagctttggatgttaaatttaagaaggtggctcacttgcgt
ccaatgttatctttaggaaacgcgttttctttcagtgatatcgctgatttttatgagaga
ataactaaagtttatcccgaggtcgagttcatatgtgagcctaagatagatggattatcg
ttctctgcgctatatcagaagggcaagctcaaatacgccctaacccgagggactggggag
tatggagaggatataacggaaaattttaaacaaatcacagctgtgccccaaactatcgat
tactatgaagaattagaaataagaggtgaagtgtatataaggaaagatgactttatggct
ctcaataacgagcggagtttaaagggagaagaagagtttgctaatccaaggaacgctgca
gctggatccttaaggcaattagacagcaatataacaaaagaaagaaaactcaggtatttc
gtctggggaggattttttgagcattgcgtttcccagagcaactttctagtaaaagcgaaa
gagttaggattttgcgttaacgaagatattattctttgtaaaactttagaagaggtcaat
agctattatctgaagatgtctgaaaaaagagctgcattgccttacgatatcgatggcttg
gtatacaaggttaacaatgttaaaatgcaacaagcgctcggacgaacaagtaaagctcca
aggtgggctattgcccataaattcccggctgaaggtgctataacacaaatagaagacatt
attgtacaagttggcagaacagggaaattaactccagttgcattgttaaagcctgtgaat
gttgggggggttttagtttcaagagccaccttacataatgaagatgagataaagcgtaaa
gacttcagaataggagatgttgttagtattaaaagagctggtgatgttatacctcaggtt
attgaagtagatattagtaaacgaaatggcaatgaaagaattttcgaatttcctaaaaac
tgtccggtttgtgagtctagcgttgaacaaattgaaggagaggcggctattagatgtaca
ggaggtagaaattgtcctgcacaattacttgaatatctttgttattttgtgcggaaggat
gcatttgatattattggtttaggagagaagcaactagaggaatttttagaagatggctta
atccaagagccggctgacatatttaaaattccggaagtaggagctgacattctagataac
ttagaaaagaagaccggttggggaaagaagtctattgctaatttattagatgcaattgaa
aagtcaaagagaataagactagataaatttatttattcccttggaatcaggcacattgga
caggttaatgcggaaataattgctaaacattttagaacatttgagaatttctatggagac
ttaaaagataataaatttgatgccttagaaaggattaatggcattggtccaaccatgata
gagtctattgaaagtttttttgccgatgtaaaaaatataaaatttatagaagaactgttg
cagtatattactatagagtacatggaagagaatgataatatatattctcctttatataat
aaaaagattatttttactggatctttagaatctatggctcgtgaccgagcagagcagatt
tcaaaagagttgggagctaaaatagtatctagtgtttctaaaaaaacagattttgtgatt
gcaggcagtgaagctggttctaaacttaacaaagcaaaagacttaggggttcaagtgttg
gcggaacaagaatggttggatatgattaatttgttgagaactacctaa
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