Candidatus Methylospira mobilis: F6R98_16310
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Entry
F6R98_16310 CDS
T06248
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmob
Candidatus Methylospira mobilis
Pathway
mmob03030
DNA replication
mmob03410
Base excision repair
mmob03420
Nucleotide excision repair
mmob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F6R98_16310 (ligA)
03410 Base excision repair
F6R98_16310 (ligA)
03420 Nucleotide excision repair
F6R98_16310 (ligA)
03430 Mismatch repair
F6R98_16310 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmob03032
]
F6R98_16310 (ligA)
03400 DNA repair and recombination proteins [BR:
mmob03400
]
F6R98_16310 (ligA)
Enzymes [BR:
mmob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F6R98_16310 (ligA)
DNA replication proteins [BR:
mmob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F6R98_16310 (ligA)
DNA repair and recombination proteins [BR:
mmob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F6R98_16310 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F6R98_16310 (ligA)
MMR (mismatch excision repair)
DNA ligase
F6R98_16310 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F6R98_16310 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QFY45158
UniProt:
A0A5Q0BSU9
LinkDB
All DBs
Position
complement(3595733..3597736)
Genome browser
AA seq
667 aa
AA seq
DB search
MQALREEIEAHNRRYYQHDEPIISDSEYDRLLVELQTLERRYREFAYPNSPTQRIGAPPS
QAFAEVLHEVPMLSLENAFTDEAVNAFDLRIREKLERDQIEYVVEPKLDGLAVSLLYENG
LLVRGATRGDGRSGEDVTHNVLTIADIPRRLAGSGFPERFEVRGEVFMPHAGFAALNERA
LANGEKLFVNPRNAAAGSLRQLDPAVTATRPLRFLCYGYGSFPERTLPDTLQQLMACFRQ
WGLPVSEHLQAVLGAEGCLSYYRRLLAGRHELPYDIDGVVYKVSRFDAQAEMGFVSRAPR
WAIAHKFPAEEATTTVLAIDVQVGRTGALTPVARLRPVFVGGATVTNATLHNADEIRRKD
IRIGDTVVVRRAGDVIPEVVKPILEKRPAAAREFIMPDRCPVCASVVEISGDEAIARCSA
ELSCPAQRREAILHFASRRAMDIDGLGEKLVDQLLESGRIATVADIYRLQADDVAGMERM
GQKSAVNLINAIGKSRETTLARFLYALGIREVGEVTAANLARHLQTLENIMQAESDALQD
FPDIGPTMAGHIATFFRQPHNREVIQALLDAGISWPEVEAPAGTASLLAGKTFVLTGTLE
SMTRDEARQRLQRLGAKVTGSVSAKTNYVIAGTDAGSKLDKALALGVPTLDETAFLGLLK
GDVDQDL
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcattgcgcgaggaaatagaagcgcataaccggcgatattatcaacacgacgaa
ccgattatttccgatagcgaatatgataggctgctggtggaactgcagacgctggagcgc
cgataccgcgaattcgcttatcccaattcgccgacgcaacggataggagcgcccccgagt
caggctttcgccgaagtccttcatgaagttccgatgctatccctggaaaatgcgttcacc
gatgaggcggtgaacgcattcgatctgcgcatacgtgaaaaactggagcgggatcaaatc
gagtacgttgtcgagccgaaactggacggcctcgcggtcagcctgctgtacgaaaacggc
ctgctggtgcgcggggctacgcgaggcgacgggcgaagcggcgaggatgtgacgcataat
gtgctgaccatagccgacattccccggcgattggccggttccggttttcccgaacgcttc
gaggtccgcggcgaagtattcatgccccatgccggttttgccgcgttgaatgaacgcgct
ctggccaacggcgaaaaattattcgtgaatccgcgtaacgccgcggcgggcagtctgcgt
cagctcgatccggcggtaacagctacaagacctttgcgttttttatgttacggatacggc
agctttcccgaacgcacgttgcctgatacgcttcagcagctgatggcctgtttcaggcag
tggggattgccggtttccgagcacctgcaggccgtgctcggcgcggaaggttgtttaagc
tactaccgccgcttgcttgccggccgccacgaactgccttacgacatcgacggcgttgtg
tacaaggtcagccgtttcgatgcgcaggcggaaatgggcttcgtatcgcgggcgccgcgc
tgggcgatcgcacataaatttccggcggaagaagcgaccaccacggtactggcgatagac
gtgcaggtggggcgtaccggggctttgaccccggtagcgcgtctgcgtccggtatttgtc
ggcggcgcgaccgtgacgaatgccaccctgcataatgccgatgaaatacgccgtaaggac
attcgtatcggcgataccgtcgttgttcgccgtgccggcgacgtcatccctgaagtagta
aaaccgatattggaaaaacgtccggcggcggcgcgggaatttatcatgcctgatcgctgt
ccggtctgcgcttccgtagtcgaaatttccggcgacgaagccatagcgcgctgcagcgcc
gagctgtcctgccctgcgcaacgccgcgaggcaatcctgcatttcgcttcacggcgcgcg
atggatatcgacggcctgggcgaaaaactggtcgatcaattactggagagcgggcgtatc
gccacagtggcggatatttaccgactgcaggcggacgacgttgccggcatggagcgcatg
gggcaaaaatccgccgtcaatctgatcaacgccataggtaaaagccgcgaaaccacgctg
gcgcgttttctttatgcactgggaatcagggaggtgggcgaggtgacggcggctaatctg
gcgcgccatctgcagaccctggaaaatatcatgcaggccgaatccgatgctctgcaggat
ttcccggatataggcccgaccatggccggccatattgccacatttttccggcagccgcat
aatcgtgaggttattcaggctttgctggacgcaggcataagttggcctgaggtcgaagcg
cctgccggcacggcgtccctcctggcgggtaaaacctttgttttgaccggcacgctggaa
agcatgacgcgcgatgaagccaggcaaaggttacagcgtttgggcgccaaggtaaccggc
agcgtttccgctaaaaccaattatgtcatagccggaaccgatgccggttccaaactggat
aaagctttggcgttgggcgttcctacgctggatgaaactgcgtttttgggacttctgaaa
ggcgatgttgaccaggatttgtga
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integrated database retrieval system
