Janthinobacterium sp. Marseille: mma_2065
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Entry
mma_2065 CDS
T00561
Symbol
ligA
Name
(GenBank) DNA ligase (Polydeoxyribonucleotide synthase)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mms
Janthinobacterium sp. Marseille
Pathway
mms03030
DNA replication
mms03410
Base excision repair
mms03420
Nucleotide excision repair
mms03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
mma_2065 (ligA)
03410 Base excision repair
mma_2065 (ligA)
03420 Nucleotide excision repair
mma_2065 (ligA)
03430 Mismatch repair
mma_2065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mms03032
]
mma_2065 (ligA)
03400 DNA repair and recombination proteins [BR:
mms03400
]
mma_2065 (ligA)
Enzymes [BR:
mms01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
mma_2065 (ligA)
DNA replication proteins [BR:
mms03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
mma_2065 (ligA)
DNA repair and recombination proteins [BR:
mms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
mma_2065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
mma_2065 (ligA)
MMR (mismatch excision repair)
DNA ligase
mma_2065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
mma_2065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_5
5_3_exonuc
DUF4874
Motif
Other DBs
NCBI-ProteinID:
ABR89648
UniProt:
A6SZQ8
LinkDB
All DBs
Position
complement(2330403..2332481)
Genome browser
AA seq
692 aa
AA seq
DB search
MQPDLFSTASQADANATPEEPDASNPAARAAWLRDELNRHNYSYHVLDNPSIPDAEYDKL
FRELQALETSHPELLVFDSPTQRVGALALSAFPQVTHSVPMLSLGNGFEDEDIIAFDKRV
SDGLNSTEIEYATELKFDGLAINLRYEDGILVEAATRGDGATGENVTTNIRTVRAIPLRL
HTATPPKVLDVRGEVMMYKADLAKLNARQRDAGGKEFANPRNAAAGSLRQLDSRITAQRT
LRFFAYGIGMLEGAEMPPSHSALLDWYAELGLPVCAERAVVKGAAGLLEFYKAVGQKRPT
LPYEIDGVVYKVNRVEQQQQLGFVSRAPRYAIAHKFPAEEALTTVQGIEVQVGRTGAITP
VARLAPVLVGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVAYVPEKRPVDA
QPFVMPTNCPVCNSPIVKLEDEAIARCSGGWVKCAAQRKGGLLHFVSRRAMDVEGLGDQL
VEQLVDKHIITTAADLYKLGFRALAELDRMADKSAQNVMAALEKSKSTTLARFIYALGIR
HVGEATAKELARHFGNLEALLQASEEQLLEVADIGPVVAQSIRSFLSDPLNMELIEQLQA
AGVRWPEHVVENKPKPFAGKTFVLTGTLPTLSRDQAAEKIEAAGGKVAGSVSKKTSYVVA
GADAGSKLAKAEELGITILDESALLQLLDTHE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgcagccggatttgttttctacggcatcgcaagcagatgcaaacgcgacgccggaggag
ccggacgccagcaatccggcggcacgcgcagcatggttacgcgatgaactgaatcgccac
aattactcttatcacgtcctcgataatccatcgatccccgacgccgaatacgacaagctg
tttcgcgagttgcaagcgctggagacgtcccatcccgagctgctggtatttgattcgccg
acacaaagggtcggtgcgctggccttgtcggcctttccgcaagtcacgcattcggtaccc
atgctatcgctcggtaatggctttgaagatgaagacatcatcgctttcgacaagcgtgtc
agcgacggcttgaacagcacggaaattgaatatgccaccgaactgaagttcgacggcctc
gcgatcaatctgcgctatgaagacggcatcctggttgaagcggcgacccgcggcgacggt
gcgacgggtgaaaacgtaacgacgaatattcgcacggtgcgtgcaattccattacgcctg
catacggcgacaccgcccaaggtgctggatgtgcggggcgaagtgatgatgtacaaggcc
gacctggcgaagctgaatgcgcgccagcgcgatgccggcggcaaggagttcgccaatccg
cgtaacgcggcggcaggcagcttgcgccagcttgattcacgtattaccgcccaacgtacc
ttgcgtttcttcgcttacggcataggcatgctggaaggtgcagaaatgccgccttcccat
tcagccttgctggattggtatgcagagcttggtttgccggtatgtgcggaacgcgcggtg
gtcaagggcgcggccggtttgctggagttttataaggcggtcgggcaaaagcgtccgacg
ctgccatatgaaatcgatggtgtcgtttataaagtcaaccgtgtcgagcaacagcagcaa
ctcggcttcgtgtcacgtgcaccacgctatgcgatcgcccataaattcccggcggaagaa
gcactgacgacagtgcaggggatagaagtgcaggtcgggcgtaccggcgccatcacgccg
gtggcacgcttggcaccggtgctggtgggcggtgtgacggtaacgaatgcgacgctgcac
aatgaagatgaagtgcggcgcaaggatatccagatcggcgataccgtcatcgtgcgtcgt
gccggcgatgtgattcctgaagtggtcgcctatgtgccggaaaaacgtccggtcgatgca
cagccttttgtgatgccgactaactgtccggtatgcaattcgcctatcgtgaagctggaa
gatgaagcgattgcacgttgctccggtggctgggtgaagtgtgcggcacaacgcaagggt
ggcttgctccattttgtttcacgtcgtgcgatggatgtggaaggcctgggtgatcagctg
gtcgagcaattggtcgacaagcacatcattactaccgccgcggatttatacaagctgggt
ttccgtgcgctggccgaactggatcgcatggccgacaagtcggcgcaaaacgtgatggcc
gcgctggaaaaatccaagtcgacgacgctggcacgtttcatttatgcactgggcatacgc
catgtcggtgaagcgacggcgaaggaactggcgcgtcattttggcaatctggaagcgcta
ttgcaggcatcagaagagcagttgctggaagtggcagatatcggtccggtggtcgcgcaa
tcgatcaggagcttcctcagcgatccgctgaatatggaactgattgaacaattgcaggcg
gcgggtgtcagatggcccgaacacgtggtggagaacaagcccaagccctttgccgggaag
acgtttgtcctgaccggaaccttgcctacgctcagtcgcgaccaggctgctgaaaaaatt
gaggcggcaggcggcaaggttgccggttccgtctccaagaaaaccagctatgtcgtagcg
ggtgccgacgccggtagcaaactggcgaaggctgaggagttaggcatcaccatacttgat
gaatctgcattgctgcaattactggatacccatgagtaa
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