Methylomonas methanica: Metme_2197
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Entry
Metme_2197 CDS
T01511
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmt
Methylomonas methanica
Pathway
mmt03030
DNA replication
mmt03410
Base excision repair
mmt03420
Nucleotide excision repair
mmt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Metme_2197
03410 Base excision repair
Metme_2197
03420 Nucleotide excision repair
Metme_2197
03430 Mismatch repair
Metme_2197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmt03032
]
Metme_2197
03400 DNA repair and recombination proteins [BR:
mmt03400
]
Metme_2197
Enzymes [BR:
mmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Metme_2197
DNA replication proteins [BR:
mmt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Metme_2197
DNA repair and recombination proteins [BR:
mmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Metme_2197
NER (nucleotide excision repair)
GGR (global genome repair) factors
Metme_2197
MMR (mismatch excision repair)
DNA ligase
Metme_2197
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Metme_2197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AEG00601
UniProt:
G0A7D1
LinkDB
All DBs
Position
complement(2400394..2402349)
Genome browser
AA seq
651 aa
AA seq
DB search
MLTTSQKKLIAQASLNFDGLSEQRFCQLCDDPGSITSASDLELTAFLQLANALYRGGEPI
ISDADYDFLYLAELKKRNPEHPLLQAVEPEPVFAGKTVDLPLIMLSTDKAYTLEDVERWA
GRIEKAARELGKNFAELTFKVTPKLDGYAAYDDGEMLYTRGDGRKGQDISRVFERGLRIA
DHGRRGLGAGEIVVSRSYFDERLAEYFDNARNFQASVIKEKELDEHAESAIKDHAAVFYP
FALLPNWLGPWATLRNDFENIVKGIWHKVDYDVDGVILEIVDEDLKTHMGATRHHHRWQL
AYKENLQTAEVEVLNVTPQTSRSGRITPVAELEPVRLSGALLSRATAHHYKMVVDKGIGP
GAIIQLARSGEVIPKIEQVLRPAEPQVPERCPSCNHTLVWDNDYLICPNNLACPAQISNS
MEHFFRVLKNNDGFGAASIKKLYEYGIRRVDEIYALNAEQFESMGFGPKQSQNLVDQLLR
SRTEAVEDWRFLAAFGVFRMGLGNCERLLHHHALTDIFSLTEADIVAIEGFAEKTAAVIT
EGFVNIKPLFDQLMALGFNLQSTQHRQDDASHPLAGKTLVFTGTLHSGSRDELSKQAKAK
GAKVGSAVSAKTDYLVAGDNVGANKLNAARDKGVNIISEQEFLQLLNGAGS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgcttaccacttcccaaaaaaaactcatcgcacaagcatccttaaactttgacggttta
agcgaacaacgcttttgccagttatgcgatgatcccggctctattacatccgccagcgat
ttggaattgacggcatttctgcaactcgccaatgccttgtaccgtggcggcgaaccgatt
atcagcgatgccgactacgacttcttgtatctggccgagctcaaaaaacgcaatcccgaa
catcccttattacaagcagtggaacctgaaccggtttttgccggcaaaaccgtggactta
ccgctgatcatgctatccacggacaaggcctacacccttgaagatgtggaacgttgggcc
ggccgtatcgaaaaagccgcgcgggaattggggaaaaattttgccgagctgacgtttaaa
gtcactccaaaactcgacggctatgcagcctatgatgatggcgagatgctttacacccgc
ggcgacggccgaaagggtcaggatatcagccgagtcttcgaacgcggcctgcggattgcg
gatcacggtcgacgcggtttgggagcgggtgaaatcgtggtttcccgcagttatttcgac
gaacgccttgccgagtatttcgataacgcccgtaactttcaggccagtgtgatcaaggag
aaggagctggacgaacacgccgaatccgccatcaaggatcacgcggcggtgttttatccc
tttgccttactgcccaactggctcggaccatgggcgaccttgcgcaacgattttgaaaat
atcgtcaagggcatatggcataaagtggattacgacgtcgacggggtgattctggaaatc
gtcgacgaagacctgaaaacccacatgggcgccacccgccaccatcatcgctggcaattg
gcctacaaggaaaatctgcaaacggctgaagtcgaagtgttgaatgtaacgccgcaaacg
tcgcgctccggccgcatcacgccggtggccgaattggaaccggtgcgtcttagcggcgcc
ctgctgtcgagggccacggcccatcactacaaaatggtggtggacaaaggcatagggccc
ggcgcgattatccaactggcccgctccggcgaagtgattcctaaaatcgagcaagtgctt
cggcccgccgaaccgcaagtacccgagcgttgtcccagttgtaaccataccttggtctgg
gataacgattatttgatttgtcccaataacctcgcctgcccggcgcaaattagcaacagc
atggagcattttttccgggtactgaaaaacaacgacggtttcggcgccgccagtatcaaa
aaactgtatgaatacggtattcgccgggttgacgaaatttatgcgctgaacgccgagcaa
ttcgaaagcatgggctttggtcccaagcagtcacaaaatctggtcgatcaattgctgcgc
agccgcacggaagccgtggaagactggcgttttttggccgctttcggtgtgttccgcatg
ggcttgggcaattgcgaacgcctgctacaccatcacgccctgacggatattttctctctt
accgaggcggatattgtggctattgagggttttgccgaaaaaaccgcggcggtgattacc
gaaggctttgtcaatatcaaacccttgttcgaccagttgatggcgctgggatttaacctg
cagagcacgcaacatcggcaagacgatgcatcccatccgttggcgggcaagacgctggta
ttcaccggcacattgcatagcggcagccgcgatgaattgagcaaacaagcgaaagccaaa
ggcgccaaagtcggtagcgcggtctcggccaaaaccgattatctggtggcaggcgataat
gtgggcgccaacaaactgaatgccgcccgcgacaaaggggttaacatcatcagcgaacag
gaatttttgcaattgctgaacggtgctggctcatga
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