Mus musculus (house mouse): 11994
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Entry
11994 CDS
T01002
Symbol
Pcdh15, Gm9815, Ush1f, av, nmf19, roda
Name
(RefSeq) protocadherin 15
KO
K16500
protocadherin-15
Organism
mmu
Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
mmu03037
]
11994 (Pcdh15)
04515 Cell adhesion molecules [BR:
mmu04515
]
11994 (Pcdh15)
Cilium and associated proteins [BR:
mmu03037
]
Primary cilia and associated proteins
USH complex and associated proteins
11994 (Pcdh15)
Cell adhesion molecules [BR:
mmu04515
]
Cadherins
Protocadherins
11994 (Pcdh15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
ECD
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
11994
NCBI-ProteinID:
NP_075604
MGI:
1891428
Ensembl:
ENSMUSG00000052613
UniProt:
Q99PJ1
Structure
PDB
LinkDB
All DBs
Position
10:72932003..74485663
Genome browser
AA seq
1943 aa
AA seq
DB search
MFLQFAVWKCLPHGILIASLLVVSWGQYDDDWQYEDCKLARGGPPATIVAIDEESRNGTI
LVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIV
VQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNG
ATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQAN
DRAQNLNERRTTTTTLTVDVLDGDDLGPMFLPCVLVPNTRDCRPLTYQAAIPELRTPEEL
NPILVTPPIQAIDQDRNIQPPSDRPGILYSILVGTPEDYPRFFHMHPRTAELTLLEPVNR
DFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPSYQGYILESAPVGATIS
ESLNLTTPLRIVALDKDIEDTKDPELHLFLNDYTSVFTVTPTGITRYLTLLQPVDREEQQ
TYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYVYTDMSPGDSVIQLTAVD
ADEGSNGEISYEILVGGKGDFVINKTTGLVSIAPGVELIVGQTYALTVQASDNAPPAERR
HSICTVYIEVLPPNNQSPPRFPQLMYSLEVSEAMRIGAILLNLQATDREGDPITYAIENG
DPQRVFNLSETTGILSLGKALDRESTDRYILIVTASDGRPDGTSTATVNIVVTDVNDNAP
VFDPYLPRNLSVVEEEANAFVGQVRATDPDAGINGQVHYSLGNFNNLFRITSNGSIYTAV
KLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVVEENLPAG
TSFLQIEAKDVDLGANVSYRIRSPEVKHLFALHPFTGELSLLRSLDYEAFPDQEASITFL
VEAFDIYGTMPPGIATVTVIVKDMNDYPPVFSKRIYKGMVAPDAVKGTPITTVYAEDADP
PGMPASRVRYRVDDVQFPYPASIFDVEEDSGRVVTRVNLNEEPTTIFKLVVVAFDDGEPV
MSSSATVRILVLHPGEIPRFTQEEYRPPPVSELAARGTVVGVISAAAINQSIVYSIVAGN
EEDKFGINNVTGVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQ
DENDHPPVFQKKFYIGGVSEDARMFASVLRVKATDRDTGNYSAMAYRLIIPPIKEGKEGF
VVETYTGLIKTAMLFHNMRRSYFKFQVIATDDYGKGLSGKADVLVSVVNQLDMQVIVSNV
PPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAYSLEDYSKCDLTVYAIDP
QTNRAIDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEG
ALLALAFIIILCCIPAILVVLVSYRQFKVRQAECTKTARIQSAMPAAKPAAPVPAAPAPP
PPPPPPPPGAHLYEELGESAMHNLFLLYHFEQSRGNNSVPEDRSSHRDGMAFSSSTTESH
EPAHVEGPLKESQPNPARTFSFVPDEDNLSTHNPLYMESIGQRSTNSDLQPRTDFEELLA
PRTQVKSQSLRGPREKIQRVWNQSVSFPRRLMWKAPNRPETIDLVEWQITNQRAECESAR
CHPSQRGSSNVLLATEDAHESEKEGGHRDTLIVQQTEQLKSLSSGSSFSSSWSHFSFSTL
PTISRAVELGSEPNVVTSPADCTLELSPPLRPRILNSLSSKRETPTCASDTEPKRNSFEI
APHPPSISAPLPHPPLPRPPIAFTTFPLPLSPPNPPPPQLVTFSLPISTPPTSSLPLPPP
LSLPPPPRPPAPRLFPQPPSTSIPSTDSISAPAAKCTASATHARETTSTTQPPASNPQWG
AEPHRHPKGILRHVKNLAELEKSVSNMYSHIEKNCPPADPSKLHTFCPAEKTGMKITHDQ
SQETLVRVVEGIDVQPHSQSTSL
NT seq
5832 nt
NT seq
+upstream
nt +downstream
nt
atgttcctacagtttgctgtctggaagtgtttaccccatgggatcctcattgcctctctc
ttggtagtcagctggggccagtatgacgatgactggcaatacgaggattgcaaactagct
aggggaggaccaccagctactatcgtggccattgatgaagagagtcgaaacggtacaatt
ctggtggataacatgttgattaaggggactgccggaggaccagaccccaccatagagctc
tctttaaaggacaacgtggactactgggtgttgctggaccccgttaaacagatgcttttc
ctgaacagtaccggaagagttctggatagagacccaccaatgaacatacactccattgtg
gtgcaagtccagtgtgtcaacaagaaggttggcacagttatctatcatgaagtacgcatc
gtggtgcgagatcggaatgacaactcccccacattcaagcatgaaagctactatgccacc
gtgaatgagctcactccagttggcaccacgatattcacggggttctcgggagacaatgga
gctacagacatagacgatggccctaatggacagatagaatacgtgattcagtacaaccca
gaagatccgacatccaacgacacctttgaaattccactcatgctgactggcaacgtggta
ctgaggaaaagactcaactatgaggataagactcgctactatgtcatcatccaagcaaat
gaccgtgcacaaaatctgaatgagaggcgaacaaccaccaccaccctcacagtagatgtt
ctagatggagatgacctgggacctatgtttctgccttgtgttcttgtgccaaacacacgt
gactgtcgtccactcacctaccaagctgccattcctgaactgaggactccggaagaactg
aaccctattttggtgacaccacctatccaagccattgatcaggaccgaaacatccaacca
ccatctgatcgacctggcatcctctactccatccttgtcggcacccctgaggattacccc
cgcttcttccatatgcatcccaggactgcagaactcactctcctggagccagtaaacaga
gacttccatcaaaaatttgatttggttattaaggctgagcaggacaatggccacccactt
cctgcctttgctagtctgcacatcgaaatactagacgaaaacaatcagagtccatacttc
acaatgcccagctatcaaggatacatcctggaatccgccccagtgggagccaccatttct
gagagcctaaacttaaccactcctctgagaattgtagctctggacaaagacatagaagac
acaaaagatccagagctccacctcttcctgaatgactacacctcggtcttcactgtgaca
cccactggtatcacccgctacctcaccctgcttcaacctgtggacagggaggaacagcaa
acctacacctttctgataacagcgtttgatggcgtgcaagaaagtgagccagtcgtggtc
aatatccgagtgatggatgcaaatgataacacgcccaccttccctgaaatctcctatgat
gtctatgtttacacagacatgagtcctggggacagcgtcattcagctgacagcggtagat
gctgatgaaggctctaatggggagatctcctatgaaatactggtggggggcaagggagac
ttcgtgatcaacaagaccacagggctggtgagcattgcaccaggcgtggagctgatcgtg
ggacagacgtatgcgctcacagtgcaggcttcggacaacgccccgcctgcagaaagaagg
cactccatctgcacagtgtacatcgaggtgcttcctcctaacaaccagagccctccccgc
ttcccgcagctgatgtacagtctggaagtcagcgaggccatgaggatcggtgctatttta
ttaaatctacaggcaactgatcgagagggagatccaatcacatatgccatcgagaatgga
gaccctcagagagtttttaatctttcagaaaccacagggattctcagcctagggaaggct
ctagaccgcgagagcacagaccgctacatcctcatcgtcacagcctcagatggcagaccg
gatggaacctcaactgccactgtgaacatagtggtgacggacgtcaatgacaacgctccc
gtgttcgatccctatctgcccaggaacctctctgtggtggaggaagaagccaatgccttt
gtgggtcaagtccgggcaacagacccagatgctgggataaacggccaagttcactacagc
ctggggaacttcaacaacctcttccgcatcacatccaacgggagcatttacacagccgtg
aagctgaacagggaagccagggaccactatgaactggttgtcgtggcaacagatggagca
gtccaccctcgacattcaactctgacactgtacatcaaggtgttggacattgatgataac
agtcctgtttttaccaattcaacgtacacagttgtcgttgaagagaatctgccagccggg
acctcctttcttcaaatagaggccaaggatgttgaccttggagccaatgtgtcatatcgg
atcagaagcccagaagtgaaacacctttttgcactgcatccattcactggagaattgtct
cttctgaggagtttggattatgaggcctttccggaccaggaggcaagcatcacattcttg
gtggaggcctttgacatttatgggactatgccacctggtatagcaacagtcacggtaatt
gtgaaggacatgaatgactaccctccagtgtttagcaaacgcatctacaaggggatggtg
gctccagatgcagtcaaggggacaccaatcaccaccgtttatgctgaagatgcggaccca
cctgggatgcctgcaagtagggtgaggtatcgagtggacgacgtgcagtttccataccca
gccagtatttttgatgtagaggaagattctggaagagtagtaacccgcgtcaatcttaat
gaagagcctactacgattttcaagctggtggttgtggcttttgatgacggcgaacctgtg
atgtccagcagtgccacggtgagaattcttgtcttacatcctggagagatcccacgcttc
acccaagaggaatacagacctcctcctgtaagtgagcttgcggccagagggactgtagtt
ggtgtcatttctgctgctgccattaatcagagcatcgtgtactccattgtggcaggaaat
gaggaagacaagtttggaatcaacaatgtcactggggtcatctatgtgaattcaccattg
gattacgagacaaggaccagctatgtgctccgggtacaagcagattctctggaagtggtc
cttgccaatctccgagtcccttcaaaaagcaatacagctaaggtgtacattgagattcag
gatgaaaacgatcaccccccagtgttccagaagaaattctacattggaggtgtgtctgaa
gacgcaaggatgttcgcatctgtgctcagagtgaaggccaccgacagggacacgggtaat
tacagtgccatggcctaccggctcatcataccgccgattaaagagggcaaagaggggttt
gtggtggaaacatacacaggtctcatcaagacagccatgctcttccacaatatgagaaga
tcctacttcaagtttcaagtgattgcaactgacgactacgggaaggggttgagcgggaaa
gcagacgtactggtctccgtggtcaatcaactggatatgcaggtcattgtctccaatgtg
ccccctacactagtggaaaagaagatagaagaccttacagagattttggatcgctacgtt
caggagcaaattcctggtgccaaggttgtggtggagtccataggtgcccgtcgccatgga
gacgcctactccctagaagactatagcaagtgcgacctgactgtctatgccatcgacccg
cagaccaacagagccatcgacagaaatgagctttttaagttcctggacggcaaactgctc
gatatcaataaagacttccagccgtattacggggaaggagggcgcattctggagattcgg
acacctgaggcagtgacgagcatcaagaagcgaggagaaagcttggggtacacagaaggg
gccttgctggccttggccttcatcatcatcctctgttgcatcccagccatcttggtcgtc
ttagtaagctaccgacagtttaaagtacgccaggctgagtgcacgaagaccgcaagaatt
cagtctgctatgcctgcagccaagcctgcagctcctgtaccagctgcgcctgcgccgccc
ccgcccccgccaccaccaccaccaggagcacatctctatgaagaactgggagagagcgca
atgcataatcttttccttctctaccattttgaacaaagcaggggaaataactcagtccca
gaagacaggagcagtcatcgcgatgggatggccttttcctccagtaccactgagtctcat
gagccagctcatgtagagggaccacttaaggagagccagcctaacccagcaaggacgttc
tcatttgttcctgatgaggataacttaagtacccataatcccctttacatggaaagtata
ggtcaaaggtcaacaaactcagaccttcagccacgaacagattttgaagagctgttggca
cccagaacacaagttaagagtcagtctctgaggggcccaagagaaaagatccagagggtg
tggaatcagtctgtgagctttcctaggcggctcatgtggaaagccccaaacaggccagag
accatagacctggtggagtggcagatcaccaatcagagagctgaatgcgaaagcgccaga
tgccacccaagccagagaggtagcagcaacgttctgctggcaactgaagatgcccacgag
tcagagaaagaagggggacacagagacaccctaatcgtccagcaaacagagcagctgaaa
tctctgtcttctggctcttctttttcctcctcttggtctcacttttctttctcaactctg
ccaacgatttccagagcggtggaactcgggtcggaacctaatgtggtcacttctcccgct
gactgcaccttggaactttctcctcctctgagaccccgtattttaaactccttaagctct
aagagagagactcccacatgtgcatcagatacagaaccaaaaaggaactcttttgagatc
gctccccatccacctagcatctctgctcccctcccacatccgcctcttcctagacctccc
attgcctttaccacttttcctcttcccctttctccccctaaccctcctcccccacaactt
gttacattttctcttcccatttctacaccccctacttcttctctacctcttcctcctcca
ctgtcacttcctcctcctcctcggccaccagctccccgcctcttcccacagcctccttcc
acgtccattccatccacagacagcatctctgcaccagctgctaaatgcactgccagtgcc
acacacgccagagaaaccacgtctacgacacagccaccagcatccaacccgcagtggggg
gcagaaccccacagacatccaaaagggatcctcagacatgtgaaaaacttggcagagctc
gagaaatcagtgtctaacatgtacagtcacatagaaaaaaactgcccacctgcagatccc
tcaaaactacacacgttttgccctgcagagaaaacaggcatgaaaatcacacatgaccag
agccaggaaacgttggttagagttgttgagggaattgacgtgcaacctcacagtcaatca
acatctttgtaa
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integrated database retrieval system