Mus musculus (house mouse): 20624
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Entry
20624 CDS
T01002
Symbol
Eftud2, 116kDa, Snrp116, U5-116kD
Name
(RefSeq) elongation factor Tu GTP binding domain containing 2
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
20624 (Eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmu03041
]
20624 (Eftud2)
Spliceosome [BR:
mmu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
20624 (Eftud2)
Complex C
U5 SnRNP specific factors
20624 (Eftud2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
20624
NCBI-ProteinID:
NP_035561
MGI:
1336880
Ensembl:
ENSMUSG00000020929
UniProt:
O08810
Q543F1
LinkDB
All DBs
Position
11:complement(102729298..102771999)
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AA seq
971 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEDEDEDEDDVGEHEDDHPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLAD
LMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGI
KSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTER
LIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILS
PLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKAP
SSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCK
KFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKM
YSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEV
NRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
ELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgagtttgggaattatattggaccagagcttgattctgat
gaagatgatgatgaactgggaagagagacaaaagatcttgatgaggatgaggacgaggac
gaggatgacgtgggagagcacgaggatgaccaccccggcatggaggtggtgctgcatgag
gacaagaagtactaccccacggccgaggaggtgtacggtcccgaggtggagaccatagtc
caggaggaagacacccagcccctcacagaacccattataaagccagtgaaaaccaagaaa
ttcactctgatggagcagacattacccgtcacggtgtatgagatggatttcttagcagat
ctgatggacaactctgagctcatcagaaacgtaaccttgtgtggccatctccaccacggc
aagacctgtttcgtagattgtttaatagaacagacgcatccggaaatcagaaagcgctat
gaccaagacctatgctatactgacatcctcttcacagaacaagagagaggcgtcggcatc
aagagcactccggtgacggtggtgctgccggacaccaaagggaagtcttacctcttcaac
atcatggacacgccaggtcatgtgaatttttctgatgaggtcacagctggcttgcgcatc
tcagatggagtggtccttttcattgatgctgctgagggggtgatgctgaacacagagcgg
ctgatcaagcacgcagtgcaggaaaggttagcagtcaccgtgtgtatcaacaaaatcgac
cggctgatcttggagctgaagctgcctccaacagatgcttattacaagctgcgacacatt
gtggatgaggtcaatggattaataagcatgtattccaccgacgagaacctgatcctttct
ccactcctgggcaacgtctgcttctccagttcccagtacagcatctgcttcacactgggt
tcctttgccaagatctacgctgacacctttggtgacattaattaccaggaatttgctaaa
agactctggggtgacatctacttcaatcctaagacgagaaagttcaccaaaaaggctccc
agcagcagctcccagaggagcttcgtggagttcatcttggagccactctataagatcctg
gcccaggtggtgggtgatgtggacaccagcctgccaaggaccctggacgaacttggcatc
cacctcaccaaggaagagctaaagctgaacatccgccccctgctcaggctggtctgcaaa
aagttctttggcgagttcacaggctttgtggacatgtgtgtgcagcacattccatctcca
aaggtgggcgccaaacccaagatcgagcatacctacactggcggcgtggactctgacctt
ggcgaggccatgagcgactgtgacccagatggtcccctgatgtgccacacgacgaagatg
tacagcacagatgatggagtccagtttcatgccttcggccgggtgctgagcggcaccatc
cacgctgggcagcctgtgaaggtgctgggggagaactacaccttggaagacgaggaagat
tcccagatctgcaccgtgggccgcctctggatctccgtcgccaggtaccacattgaggtg
aatcgtgttcctgctggcaactgggtcctgattgaaggtgttgaccagccgatcgtgaag
acagcaaccataactgaaccccgaggcaatgaggaggctcagattttccggcccttgaaa
ttcaataccacatctgttatcaagattgccgtggagccggttaacccctcagagctgccc
aaaatgcttgatggcctgcgcaaggtcaacaagagctatccatctctcaccaccaaggtg
gaagagtctggcgagcatgtgatcctgggcactggggagctctacctggactgtgtgatg
cacgacctgcggaagatgtactcagagatcgacatcaaggtggctgacccagttgtgaca
ttctgtgagacagtggtagaaacgtcctccctcaaatgctttgctgagacacccaataag
aagaacaagatcaccatgattgccgagccccttgagaagggccttgctgaggacatagag
aatgaagtggtccagatcacctggaacagaaagaagctgggagagtttttccaaacaaag
tacgactgggatctgctggctgcccgttccatctgggccttcggacctgatgctacaggc
cccaacatcctagtagatgatacactgccctcagaggtagacaaggcccttctcggctca
gtgaaggacagcattgttcaaggtttccagtgggggaccagggaaggacccctctgcgat
gaattgattcggaatgtcaagtttaagatactggatgctgtggttgcccaggaacccctc
caccggggtggaggtcagatcattcccacagccaggagggtagtgtactctgccttcctc
atggccactccccgtctgatggagccttactactttgtagaggtccaggctcctgcagat
tgtgtgtctgctgtttacacagtcctggccagacgcaggggtcatgtgactcaggatgca
cccataccaggctcccctctctataccatcaaagcgttcatcccggccatcgactcattc
ggctttgagactgatctccgcactcacacccagggacaggccttttccctgtctgtcttc
caccattggcagattgtcccaggcgatcctctggacaagagcattgtcattcgcccgctg
gagccacagccagctcctcacctggctcgggagttcatgatcaaaacccgtcgtaggaag
ggcctgagtgaagatgtgagcatcagcaagttcttcgacgatcctatgttgctggagctc
gccaaacaggatgttgtgctcaattatcccatgtga
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