Mus musculus (house mouse): 237782
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Entry
237782 CDS
T01002
Symbol
Smcr8, 2310076G09Rik, D030073L15Rik
Name
(RefSeq) Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04140
Autophagy - animal
mmu05014
Amyotrophic lateral sclerosis
mmu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
237782 (Smcr8)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
237782 (Smcr8)
05022 Pathways of neurodegeneration - multiple diseases
237782 (Smcr8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mmu04131
]
237782 (Smcr8)
Membrane trafficking [BR:
mmu04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
237782 (Smcr8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
Motif
Other DBs
NCBI-GeneID:
237782
NCBI-ProteinID:
NP_001078909
MGI:
2444720
Ensembl:
ENSMUSG00000049323
UniProt:
Q3UMB5
LinkDB
All DBs
Position
11:60668351..60679113
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AA seq
935 aa
AA seq
DB search
MISAPDVVAFTKEDEYEEEPYNEPALPEEYSVPLFPYASQGANPWSKLSGAKFSRDFILI
SEFSEQVGPQPLLTIPNDTKVFGTFDLNYFSLRIMSVDYQASFVGHPPGSAYPKLNFVED
SKVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYISADQHKIMQQFQELSAEFSKAS
ECLKMGNRKAFAGELEKKLKDLDYTRTVLHTETEIQKKANDKGFYSSQAIEKANELANVE
KSIIEHQDLLRQIRSYPRQKTKIPDLQPGDTEHTQDQADQVSTTSNPEESANADLYTCRP
AYTPKLIKAKSTKCFDKKLKTLEELCDTEYFTQTLAQLSHIEHMFRGDLCYLLTSQIDRV
LRKQQPITNFLFEDFVEVDDRMEKQENVPSQPSQDRLPPKPVEECPIPKVLISVGSYKSS
VESVLIKMEQELGDEEYTGVEATEARSFDPQENLDYLDMDMKGSISSGESIEVLGTEKSA
SVLSKSDSQASLTVPLSPHVVRSKAVSHRTISEDSIEVLSTCPSEALIPDDFKASYPSAI
NEEEAYADNEGAIHFQASAGSPEPDETQEGNLENIPSQIDSSCCIGKESEGHLVPLPTPA
YTLSDEDSVVSIPPQRYIQKDQGLHVDFGVENTDPSPRDNSCEMFPAYELDPSCLLASRD
VSKMSLDNYSDTTSYMGSAASTSSDRIPSAPPAGLSSERHKKRAGQNALKFIRQYPFAHP
AIYSLLSGRTLVVLGEDETIVRKLVTALSIFVPNYGCYAKPVKHWISSPLHIMDFQKWKL
IGLQRVASPANVGTLHTLSRYSRYTSILDLDSKTLRCPLYRGTLVPRLADHRTQIKRGST
YYLHVQSMLTQLCSKAFLYTFCHHLHLPAHSEETQEAVASRQTSFLKLNLGLVNEDIRVV
QYLAELLKLHYMQESPGTTHPLLRFDYVPSFLYKI
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcgcccctgatgtggtggccttcaccaaggaagatgaatacgaggaagaacct
tacaatgagcccgctttgcctgaggagtactcagtccctctctttccttatgccagccag
ggggcaaacccctggtctaaactgtctggggccaagttctccagggacttcatcctcatt
tccgagttctctgagcaggtgggaccccagcccttgcttaccatccccaatgacaccaaa
gtttttggcacttttgatcttaattacttctctttgcggattatgtcggtggattaccag
gcttcattcgtaggccatcctcccggttctgcctaccccaagttgaactttgtggaagac
tctaaagtggtactgggagactctaaggaaggggcctttgcatatgtgcaccacctcacc
ttgtacgacctggaggccaggggctttgtgaggcccttttgtatggcttatatctccgca
gaccagcataaaatcatgcagcagttccaagagctctcggccgaattttccaaagcatct
gagtgcttgaagatgggcaacaggaaggcattcgctggggaacttgaaaaaaagctgaaa
gacttggattacacaaggacagtgctacacacagaaaccgagatccagaagaaagccaac
gacaagggtttttattcttctcaggcgattgagaaagccaatgaactggccaatgtggag
aagtccatcatcgaacatcaagatttgctgaggcagatccgctcataccctcgtcagaag
acgaagatccctgacttgcagcctggtgatacagagcatacccaggatcaggctgaccag
gtatccactacctctaatcctgaggagtccgctaatgcagacctttatacctgcagaccg
gcttacacccccaaactcatcaaagcaaagtccaccaagtgttttgacaagaagttgaag
accttggaggaactctgtgacactgagtatttcactcagaccctggcccagcttagccac
attgaacacatgttcagaggagacctgtgctacctcctgaccagtcagattgacagagtg
cttcgaaaacaacagcccataacgaatttcctctttgaagattttgtagaggtggatgac
aggatggaaaagcaagagaatgtaccctctcagcccagtcaggacaggctgcctcccaag
cctgtagaagaatgccccattcctaaagtgttaattagcgttggctcttacaagtccagt
gtggagtctgtattgatcaagatggagcaggaacttggcgatgaagagtacacgggggtg
gaggcaacagaggcacgcagttttgacccccaagagaacctggactacctggatatggat
atgaaagggagcatcagtagtggggaaagcattgaggtgctgggcaccgagaagtcagcc
tctgtgttgtcgaaatctgacagccaggccagcctcaccgtgccattgagcccccatgta
gtccgtagcaaagcggtcagccacaggacaatcagcgaggacagcattgaagtcttaagt
acctgcccttctgaggccctcattcctgatgactttaaggccagttacccaagtgccatt
aatgaagaagaagcctatgcggataatgagggggccatccatttccaggcaagtgccggc
tcaccagaaccggatgagactcaggagggcaacttggaaaatatcccatcccaaatagac
tccagctgctgtattggaaaggagagtgaaggtcacttggtgcctctcccaaccccagcc
tacactctttctgatgaggacagtgtggtgagcattcccccacagcgctacatacagaag
gaccaggggctccacgtggacttcggagtggaaaacactgacccttctccccgagacaac
agttgtgaaatgttcccagcttatgagctggatccaagctgccttctggctagccgagat
gttagtaagatgagcctggataactactcggataccactagctacatgggcagtgcggcc
tctaccagctcagacagaatcccctcagcacctcctgctggcctatcctctgagaggcac
aaaaagagagctggccagaatgccttaaaattcatccgccagtacccttttgcccaccca
gccatctactccctgctcagtgggaggacacttgtggtcctgggcgaagatgaaaccatt
gtcaggaagctggtgactgcactgtccatctttgttcccaactatggctgctatgccaag
ccggtgaagcactggatttcttcccctttgcatattatggatttccagaagtggaagctt
attggcctacaaagagtggcctctcctgccaatgtgggtaccctccataccctgagccgt
tacagccgttatacaagcatcctggacctggacagcaagaccctacgctgtcccctatac
aggggtacactggtaccccgcctggctgaccatcgcactcagatcaagcggggcagcaca
tactaccttcacgtccagagcatgctcacccagctctgctccaaggcattcctctacacc
ttttgtcaccacttgcatctgcccgcccacagtgaggagacacaagaagcagtggccagc
agacaaaccagcttcctaaagctaaacctggggctcgtgaacgaggacatcagagtggta
cagtacctggctgagctgttgaaactgcactatatgcaggagtcaccggggaccacccac
ccactgctcaggtttgactacgtccccagctttttgtacaaaatctaa
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