Mycoplasma mycoides subsp. mycoides SC Gladysdale: MMS_A0838
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Entry
MMS_A0838 CDS
T02595
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmym
Mycoplasma mycoides subsp. mycoides SC Gladysdale
Pathway
mmym03030
DNA replication
mmym03410
Base excision repair
mmym03420
Nucleotide excision repair
mmym03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MMS_A0838 (ligA)
03410 Base excision repair
MMS_A0838 (ligA)
03420 Nucleotide excision repair
MMS_A0838 (ligA)
03430 Mismatch repair
MMS_A0838 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmym03032
]
MMS_A0838 (ligA)
03400 DNA repair and recombination proteins [BR:
mmym03400
]
MMS_A0838 (ligA)
Enzymes [BR:
mmym01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MMS_A0838 (ligA)
DNA replication proteins [BR:
mmym03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MMS_A0838 (ligA)
DNA repair and recombination proteins [BR:
mmym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MMS_A0838 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MMS_A0838 (ligA)
MMR (mismatch excision repair)
DNA ligase
MMS_A0838 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MMS_A0838 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_ligase
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ADK69142
LinkDB
All DBs
Position
complement(870447..872453)
Genome browser
AA seq
668 aa
AA seq
DB search
MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLETLYPELITSDSP
SQKVGGMVSEKFLKITHKTPMLSLGNVFSFDEFLDFNTQISKISNTLDNQYVAELKIDGL
SISLVYENGSLVSAATRGNGVVGEDVTINARTIKSIPLKISKKERVEVRGEIYLSKAEFE
KINQKRLLNNEDLFINPRNAAAGTLRQLDSKIVASRNLDAFLYYYISDDSNNLTQYQSIL
KLNELGFKTNKETMLCKNLDEIKAYIDKYTNLKNDLDYQIDGIVFKINDKNLQNSLGFTS
KIPKWAIAYKFPAEIKQTKLLDIFATVGRTGKITYNAKLEPVFLMGAKISAATLNNAEYI
KTKDLRINSIVKIKKAGDVIPEVIEAIKDEDFYKLEKFKPALYCPNCHSLLEKNENEVDQ
FCINSSCSMKILRSLQHFSSREAMNIVSLGDRSLEILFNLKIIQNISDIYKLEEYKDQIL
AIDNFGLKSYLNLIDSINMSKNNSLEKVLFGLGIRHIGSKTAKILARKYQNIDNLMSASY
DELIQINSIGESLALSIIDWFKIEDNLKLIDELKSFNINFNYLGAKINSDSIIANKSFVI
TGTLTRPREEFKTLIENNAGKVIGSISKQTDYLLAGNNVGSKLEKAKKLGVKIIDEQQFF
DLLKSEKG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagataaagctttattaagaattaatcaattaaaagaacaattgaacttatga
tcaaaacaatattatgttgatgataatccaagtgttgatgatacagagtatgatctagct
ttaaaagaattaattagtttagaaactttatatccagaattaattacaagtgattcacca
agtcaaaaagttggtggaatggttagtgaaaagtttttaaaaatcactcataaaacacca
atgctaagtttaggcaatgtttttagttttgatgagtttttagattttaatactcaaata
agtaaaatttcaaatactttagataatcaatatgttgctgaattaaaaattgatggttta
tcaatttcattagtttatgaaaatggaagtttagtttcagctgcaactagaggtaatggt
gttgttggtgaagatgttactattaatgcaagaacgattaaatcaattcctttaaaaatt
agtaaaaaagaacgtgttgaagttagaggagaaatttatttatctaaagctgaatttgaa
aaaattaatcaaaaaagattgttaaataatgaagatctatttataaatcctagaaatgca
gctgcaggtactttaagacagttagattcaaaaatagttgcaagtagaaatttagatgct
tttttatattattacattagtgatgattcaaataatttaactcaatatcaatcaatttta
aaattaaatgaattaggttttaaaactaataaagaaacaatgttatgtaaaaatttagat
gaaattaaagcatatattgataaatatactaatttaaaaaatgatttagattatcaaatt
gatggaattgtttttaaaattaatgataaaaatttacaaaacagtttaggatttactagt
aagattccaaaatgagcaattgcttataagtttccagctgaaatcaaacaaactaaactt
ttagatatatttgcaacagttggaagaactggaaaaattacttataatgctaaattagaa
cctgtttttttaatgggagctaaaattagtgctgctactttaaataatgcagaatatatt
aaaacaaaagatttaagaattaatagtatagttaaaataaaaaaagctggagatgttatt
ccagaagttattgaagctattaaagatgaagatttttataaattagaaaaatttaaacct
gcattatattgtccaaattgtcattctttattagaaaaaaatgaaaatgaagttgatcag
ttttgtataaattcttcttgttctatgaaaatattaagatcattacaacattttagtagc
agagaagctatgaatattgtaagtttaggagatagaagtttagagattttatttaatcta
aaaattattcaaaatatttcagatatttataaattagaagaatataaagatcaaatttta
gcaattgataactttggtttaaaaagttatttaaatttaattgattcaattaatatgtct
aaaaataattctttagaaaaagttttatttggtttaggaattagacatattggaagtaaa
actgcaaaaattttagctagaaaatatcaaaatatagataatttaatgagtgctagttat
gatgaattaattcaaataaattcaattggagaatcattagctttatctattattgattga
tttaaaatagaagataatttaaaactaattgatgagttaaaatcatttaacattaatttt
aattatttgggagcaaaaattaattctgattcaataattgctaataaatcatttgtaatt
actggaactttaacaaggccaagagaagaatttaaaacactaattgaaaataatgcaggt
aaagtaattggatctatttctaaacaaactgactatttattagctggtaataatgtaggt
tctaaactagaaaaagcaaaaaaactaggtgttaaaattatagatgaacaacaatttttt
gatttattaaaatcagagaaaggataa
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