Mycolicibacterium neoaurum VKM Ac-1815D: D174_10530
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Entry
D174_10530 CDS
T02959
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mne
Mycolicibacterium neoaurum VKM Ac-1815D
Pathway
mne03030
DNA replication
mne03410
Base excision repair
mne03420
Nucleotide excision repair
mne03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D174_10530
03410 Base excision repair
D174_10530
03420 Nucleotide excision repair
D174_10530
03430 Mismatch repair
D174_10530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mne03032
]
D174_10530
03400 DNA repair and recombination proteins [BR:
mne03400
]
D174_10530
Enzymes [BR:
mne01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D174_10530
DNA replication proteins [BR:
mne03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D174_10530
DNA repair and recombination proteins [BR:
mne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D174_10530
NER (nucleotide excision repair)
GGR (global genome repair) factors
D174_10530
MMR (mismatch excision repair)
DNA ligase
D174_10530
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D174_10530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
HHH_3
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AHC24986
UniProt:
V5XBD4
LinkDB
All DBs
Position
2212270..2214360
Genome browser
AA seq
696 aa
AA seq
DB search
MPWTNLTRVSSPDAEARGRWQELAEEVRGHQFRYYVKDAPVISDADFDVLLRRLEALEEQ
YPELRTPDSPTQLVGGAGFATDFAAADHLERMLSLDNAFDTDELSAWAARLGAEIGTEID
YLCELKIDGVALALVYRDGVLVRAATRGDGRSGEDVTLNARTIDDIPERLTGTDEFPVPA
VLEVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMICHG
LGKAEGFTPTSLHDAYRALGGWGLPVSTHTTRVRGIAAVAERIAYWGEHRHDVEHEIDGL
VVKVDDVSLQRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVNVGRTGRVTPFAYMEPVK
VAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLAPVVDLRDGSEREFVMPTH
CPECGTALAPAKEGDADIRCPNTRTCPAQLRERVFHVAGRGAFDIEGLGYEAASALLQAG
AITDEGDLFTLTADQLLQTDLFTTKAGALSANGKRLLANLDKAKSQPLWRVLVALSIRHV
GPTAARALAGEFGSLDAIRAASEAELAAVEGVGPTIAAAVIEWFDVDWHRTIVDKWQDAG
VRMVDERDAGIERTLEGLSIVVTGSLTGFSRDEAKEAILARGGKAAGSVSKKTSYVVAGD
APGSKYDKAMELGVPVLDEDGFVKLLSEGPEPTDES
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgccctggactaacctgaccagagtgagctcaccggatgcagaggcgcgtggtcgctgg
caggaacttgccgaggaggtgcgtgggcaccagttccggtactacgtcaaggacgccccg
gtcatctccgacgcggatttcgacgtactgctgcgccgcctggaggcgctcgaggagcaa
taccccgaactgcgcaccccggattcgcccacgcaactggtcgggggtgccggcttcgcc
acagatttcgccgcggccgatcacctggagcggatgctctcgctggacaacgccttcgac
accgacgaactgtcggcgtgggcggcgcggttgggtgccgagatcggtaccgagatcgac
tatctgtgcgagctcaagatcgacggtgtcgcgttggcgctggtgtaccgcgacggtgtg
ttggtgcgcgccgccacccgcggcgacggccgcagcggtgaagatgtcaccctgaatgcc
cgcaccatcgacgatattcccgaacgactcaccggcacagacgaattccccgttcctgcg
gtgctcgaggtgcgcggcgaggtgttcttccgggtcgccgatttcgaggacctcaacgcc
ggtctggtggccgagggaaagccgccgttcgccaacccgcgcaacagcgccgccggatcg
ttgcgccagaagaaccccgcggtgaccgcgcggcggcggctgcgcatgatctgtcacggt
ctcggcaaggccgaggggttcaccccgacctcgctgcacgatgcctaccgggcgctgggc
ggctgggggctgccggtgtccacccacaccacccgggtccgcggcatcgcggcggtcgcc
gaacgcatcgcctattggggtgaacaccgccacgacgtcgagcacgagatcgacggcctg
gtggtcaaggtcgacgacgtgtcgctgcagcgccgcctcggtgccacctcgcgggcccca
cgctgggcgatcgcctacaagtacccgcccgaggaggtcaccaccaaactcctcgacatc
cgggtcaatgtcggacgcaccggacgggtcaccccgttcgcctacatggagccggtgaag
gtcgccgggtccaccgtcgggctggccaccctgcacaacgcatccgaggtcaagcgcaag
ggtgtgctgatcggtgacacggtggtgatccgcaaggccggcgatgtcatccccgaggtg
ctcgctccggtggtggacctgcgtgatggcagtgaacgcgaattcgtcatgccgacgcat
tgtccggagtgtgggactgccttggcgccagccaaggagggcgatgccgacatccgttgc
ccgaacacccgaacctgcccggcacagttgcgcgagcgcgtttttcacgtcgcgggccgg
ggtgcgttcgatatcgagggcctcggttatgaggcggccagcgcgctgctgcaggcgggg
gccatcaccgacgagggcgacctcttcacgctgaccgcagaccaattactgcagaccgac
ctgttcaccaccaaggccggtgcactctcggccaacggtaaacggctgctggccaacctg
gacaaagcgaagtcccagccgctgtggcgggtgctggtcgccctgtccatccggcatgtc
ggccccaccgcggcccgcgcgctggccggcgagttcggcagtctcgacgccatccgggcg
gcctcggaggcggagctggccgccgtcgagggtgtcgggccgaccatcgccgccgccgtc
atcgaatggttcgacgtcgactggcaccgcaccatcgtcgacaaatggcaggacgccggc
gtgcgcatggtcgacgagcgggacgccggtatcgagcgcacgctggagggcttgtccatc
gtcgtcaccggctcgctcaccggcttctcacgcgacgaggccaaggaggcgattctggcc
cgcggtggcaaggccgccggatcggtgtcgaagaagacctcctatgtcgtcgccggtgac
gcgccgggctccaagtacgacaaggcgatggagctgggtgtgccggtgctcgacgaggac
gggttcgtgaagctgctgagcgaggggccggagccgacggacgagtcctag
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