Microbacterium neungamense: JSY13_05755
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Entry
JSY13_05755 CDS
T09212
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mnf
Microbacterium neungamense
Pathway
mnf03030
DNA replication
mnf03410
Base excision repair
mnf03420
Nucleotide excision repair
mnf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mnf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JSY13_05755 (ligA)
03410 Base excision repair
JSY13_05755 (ligA)
03420 Nucleotide excision repair
JSY13_05755 (ligA)
03430 Mismatch repair
JSY13_05755 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mnf03032
]
JSY13_05755 (ligA)
03400 DNA repair and recombination proteins [BR:
mnf03400
]
JSY13_05755 (ligA)
Enzymes [BR:
mnf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JSY13_05755 (ligA)
DNA replication proteins [BR:
mnf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JSY13_05755 (ligA)
DNA repair and recombination proteins [BR:
mnf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JSY13_05755 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JSY13_05755 (ligA)
MMR (mismatch excision repair)
DNA ligase
JSY13_05755 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JSY13_05755 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
UWF78498
LinkDB
All DBs
Position
1201782..1204100
Genome browser
AA seq
772 aa
AA seq
DB search
MPENISLEAARTEAEELTTRILEAKDAYYGRDTSLVDDATYDSWMRRLEELERLHPELQG
QDSPTQMIGAAEGTALATIEHAERMLSLDNVFSIDELRDWAAKTQAAAGREVAWLTELKI
DGLAINLRYEDGVLTSAATRGDGRVGEIVTENALRLADIPERLAGSGHPPVVEVRGEVFI
PVAAFERLNAAQAEFRDRAVAEARSRWESRAGAKRPFDEDKAKAAAARRFPAFANPRNAA
SGGLRQQLDKKTGLEREAGLLRVDSLSLYVHGIGAWPDPPVAAQSEVYDLLAEWGLPTSP
HTKVCRSIDEVVAFVEHFGEHRHDIEHELDGIVVKVDELALHDELGATSRAPRWAIAYKY
PPEEVQTKLLDIVVSVGRTGRATPYAVMAPAHVAGSVVRQATLHNKDVVKAKGVLIGDTV
VLRKAGDVIPEVLGPVVEKRDGTEREFVMPERCPECDTPLRPMKEGDIDLRCPNARSCPA
QVRGRVEHIGSRGALDIEALGEVTAAALTQPSVPEVPPLETEAGLFDLTLEDLVPIEVVV
KDAETGLPKVDDDGIAKTRAPFRRNPSPAERKAGLDGPQPSSQALKLLDELEKAKTKDLW
RLLVSLNIRHVGPVAARALAQWFGSLDAIRAASRDELAAVEGVGGIIADSLRDWFAVDWH
QEIVQRWADAGVQWSTPGHPGPGAAGAGGGVLEGLTVVATGSLEGYTREGAQEAIIKAGG
KAASSVSKKTDFVAAGPGAGSKLAKAEELGIRILDAAQFHILVTQGPDALDA
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
gtgccggagaacatctcgctggaagccgcccgcaccgaggccgaggagctgaccacccgc
atcctcgaggccaaggacgcctactacgggcgggacacctcgctcgtcgacgacgccact
tacgactcctggatgcggcggctggaggagctcgagcggctgcaccccgagctgcagggg
caggattcgccgacgcagatgatcggcgcggcggagggcaccgccctcgcgacgatcgag
cacgccgagcggatgctgagcctcgacaacgtcttctcgatcgacgagctgcgcgactgg
gccgccaagacgcaggcggccgccgggcgcgaggtcgcctggctcaccgagctgaagatc
gacggcctggccatcaacctccgctacgaggacggagtcctcacctccgcggccacgcgc
ggcgacggacgtgtcggggagatcgtcaccgagaacgccctgcggctcgccgacatcccc
gagcggctcgccggctccgggcatccgccggtcgtcgaggtgcgcggcgaggtgttcatc
cccgtcgccgcgttcgaacgtctcaacgccgcgcaggccgagttccgcgaccgcgccgtg
gcggaggcgcgcagccgctgggagtcccgtgccggggcgaagcggccgttcgacgaggac
aaggcgaaggccgccgcggcccgccgcttcccggccttcgccaacccccgcaacgcggcc
agcggaggcctgcgccagcagctggacaagaagaccggtctggaacgggaggccggcctg
ctgcgcgtcgactccctgtcgctctacgtgcacggcatcggcgcctggcccgacccgccg
gtcgcggcgcagagcgaggtgtacgacctgctcgcggagtggggactccccaccagcccg
cacacgaaggtgtgccgcagcatcgacgaggtcgtcgccttcgtcgagcacttcggcgag
caccggcacgatatcgagcacgagctggacggcatcgtcgtcaaggtcgatgagctcgcg
ctgcacgacgagctcggcgccaccagccgggcgccgcgctgggccatcgcgtacaagtac
ccgccggaggaggtgcagacgaagctgctcgacatcgtcgtctccgtcgggcgcaccggc
cgggccaccccgtacgccgtgatggcgcccgcgcacgtcgccgggtcggtggtgcggcag
gcgaccctgcacaacaaggacgtcgtgaaggccaagggcgtcctcatcggcgacacggtc
gtgcttcgcaaggcgggggatgtgatccccgaggtgctcggcccggtcgtggagaagcgc
gacggcacggagcgggagttcgtgatgccggagcgctgccccgagtgcgacactccgctg
cgtccgatgaaggagggcgacatcgacctccgctgcccgaacgcccggtcgtgccccgcg
caggtgcgcgggcgggtggagcacatcggctcccgcggcgccctcgacatcgaagcgctg
ggcgaggtgaccgccgctgcactcacacagccgagcgtgcccgaggtcccgccgctggag
accgaggccgggctgttcgacctcacgctcgaggatctcgtcccgatcgaggtcgtcgtg
aaggatgccgagaccggcctgcccaaggtcgacgacgacggcatcgccaagacccgcgcc
ccgttccgccgcaacccgagcccggcggagcgcaaggcggggctcgacggcccgcagccc
tcgtcgcaggcgctgaagctgctcgacgagctcgagaaggcgaagacgaaggacctctgg
cgtctgctcgtcagcttgaacatccgccatgtcggcccggtcgccgctcgggcgctggcg
cagtggttcggatcgctggacgccattcgcgccgcatctcgggacgagctcgccgcggtc
gagggcgtgggcggcatcatcgccgactcgctacgggactggttcgccgtggactggcac
caggagatcgtgcagcggtgggcggatgccggagtgcagtggtccacgcccggccacccc
ggccccggcgccgccggggccggcgggggagtcctcgagggcctcaccgtcgtggcgacc
ggatccctcgagggctacacgcgcgagggagcgcaggaggcgatcatcaaggccggcggg
aaggcggcctcgagcgtgtccaagaagacggacttcgtcgcggccggccccggcgccggc
tccaagctcgcgaaggccgaggagctgggcatccgcatcctggatgcggcgcagttccac
atcctcgtgacgcaggggccggacgcgctcgatgcgtga
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