Mustela nigripes (black-footed ferret): 132004362
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Entry
132004362 CDS
T09425
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132004362 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mnp03041
]
132004362 (EFTUD2)
Spliceosome [BR:
mnp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132004362 (EFTUD2)
Complex C
U5 SnRNP specific factors
132004362 (EFTUD2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
132004362
NCBI-ProteinID:
XP_059236708
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All DBs
Position
16:17760160..17801196
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDEDDVGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggataccgacttgtatgatgagtttgggaattatattgggccagagcttgattctgat
gaagatgatgatgaattgggcagagagaccaaagatcttgatgagatggacgacgatgac
gacgaggatgacgtaggagaccatgacgaggaccacccagggatggaggtggtgctgcac
gaggacaagaagtactaccccacggccgaggaggtgtacggccccgaagtggagaccatc
gttcaggaggaagacacccagcctctcaccgaacctattattaagccggtgaaaaccaag
aagttcactctgatggagcagacattacctgtcacggtgtatgaaatggatttcttggca
gatctgatggataactcggaactcatcagaaatgtgaccctctgtggccatctccaccat
ggcaagacgtgttttgtggattgcttaatagagcagactcacccggaaatcaggaagcgt
tatgaccaagatctgtgctatactgacatcctcttcacagagcaggagagaggtgttggc
atcaaaagcactcccgtgacagtggtcttgccagataccaaaggaaaatcttacctcttc
aatatcatggacactccaggacatgtgaatttttctgatgaggtcacggctggcttgcgc
atctcagatggagttgtcctgttcattgatgccgctgaaggcgtgatgctgaacacagag
cggctgatcaagcacgcggtgcaggagaggctggcggttaccgtgtgcatcaacaagatt
gaccggctgattctggaactgaagctccctcccaccgatgcttattacaagctgcggcac
atcgtggatgaggtcaatggactcataagcatgtattccaccgatgagaacctgatcctt
tccccactcctgggcaacgtctgcttctccagctcccagtacagcatctgcttcacgctg
ggctcctttgccaagatctatgctgacaccttcggtgacattaactaccaggaatttgct
aaaagactctggggtgacatttatttcaaccccaaaacacgaaagttcaccaaaaaggcc
ccaaccagcagctcccagaggagctttgtggagtttatcttggagcccctttataagatc
ctcgctcaggtggtgggtgacgtggacaccagcctccccaggactctggatgagcttggc
attcacctgaccaaggaggaactgaagctgaacatccgccccctgctcaggctggtctgc
aaaaaattctttggcgagttcacaggctttgtggacatgtgtgtgcagcatatcccctct
ccaaaggtgggcgccaagcccaagattgagcacacctacaccggtggcgtggattctgat
ctcggcgaggccatgagcgactgtgaccccgacggtcccctgatgtgccacactaccaag
atgtacagcacagatgatggagttcaatttcatgcctttggccgggtgctgagcggcacc
atccacgccgggcagcctgtgaaggtgctgggggagaactataccctggaggatgaggag
gactcccagatatgcaccgtgggccgcctctggatctctgtagccaggtaccacattgag
gtgaaccgtgttcctgctggcaactgggttctgatcgaaggtgttgatcaaccaattgtg
aagacagcgaccataactgaacctcgaggcaatgaggaggctcagattttccggcctttg
aagttcaacaccacgtctgttatcaagattgctgtggaaccggtcaacccctcagagctg
cccaagatgctggacggtctgcgcaaggtcaacaagagctatccatccctcaccaccaag
gtggaagagtccggggagcatgtgattctgggtaccggggagctctacctggactgtgtg
atgcacgacttgcggaagatgtactcagagatcgacatcaaggtggctgaccctgttgtc
acattttgtgagacggtagtggaaacatcttcactcaagtgctttgctgaaacacccaat
aagaagaacaagatcaccatgattgctgagccccttgagaagggccttgccgaggacata
gagaacgaggtggtccagatcacgtggaacaggaagaaactcggagaattcttccagacc
aagtacgattgggatctgctggctgcacgttccatctgggcttttggccctgatgccacc
ggccccaacatcctggtggatgataccctgccctctgaggtggacaaggctcttcttggc
tcagtgaaggacagtatcgttcaaggtttccagtggggaacccgagagggacccctctgt
gatgagctgattcgaaatgtcaagtttaagatcctggatgcagtggttgcccaagagccc
ctgcaccggggcgggggccaaatcatccccacggcaaggagagtcgtctattctgccttc
ctcatggccactcctcgtctgatggagccttactactttgtggaggtccaggcccctgcg
gattgtgtctccgctgtgtacaccgtcctggccaggcgcagggggcatgtgactcaggat
gcacccatcccaggctcccctctctacaccatcaaagctttcatccccgccattgattct
tttggctttgagactgatctgcggactcacacccaagggcaagccttttccttgtctgtc
ttccaccattggcagattgtgcccggtgatcctctggacaagagcattgtcatccgcccg
ctggagccacaacctgctcctcacctggcccgggaattcatgatcaaaacccgtcgcagg
aagggcctgagcgaggacgtaagcatcagcaagttcttcgatgaccccatgttgctggag
ctcgccaagcaggatgttgtgctcaactaccccatgtga
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