KEGG   Mustela nigripes (black-footed ferret): 132020229
Entry
132020229         CDS       T09425                                 
Name
(RefSeq) DNA dC->dU-editing enzyme APOBEC-3B-like
  KO
K18750  C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
mnp  Mustela nigripes (black-footed ferret)
Pathway
mnp03250  Viral life cycle - HIV-1
mnp05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:mnp00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    132020229
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    132020229
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mnp03019]
    132020229
Messenger RNA biogenesis [BR:mnp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     132020229
SSDB
Motif
Pfam: APOBEC2 NAD2 NAD1 APOBEC_N SNAD4 APOBEC3 APOBEC_C APOBEC4_like APOBEC4 APOBEC1 dCMP_cyt_deam_1 Toxin-deaminase MafB19-deam
Other DBs
NCBI-GeneID: 132020229
NCBI-ProteinID: XP_059260424
LinkDB
Position
6:complement(9174976..9187731)
AA seq 414 aa
MDPWHHDPRDPLEKISPGTFLFHFPSLCYASGRKLCYLCFHVEGEGEEDSWYDLGVFQNK
VYPQAPCHAEACFLSWFRDQNLPPEEHYRVTWFLSWSPCPTCAEDVIEFLEEYRNVTLSI
YTARLYYFWDPDFQDGLYKLWCAGVHLDIMSFEDYEYCWETFVDHKGMRFQSWDLLRDND
LLAEELQDILGKCLLTAWANWLLSLLFECLLNGAWRLPTPIRSTMNPLRREIFYHQFGNQ
PRAPRPFHRRKTYLCYQLKPHEGHIKRLQNKKKRHAEIRFIDHIRALQLDRSQRFEITCY
LTWSPCPSCAKELAVFVQDHPHIRLRLFASRLYFHWRWKHQEGLRLLHRSGISVAVMRLQ
EFEDCWGNFVDHQGEPFQPWHKLEQYSESITRRLRRILEHPQNNLETNFRNLHI
NT seq 1245 nt   +upstreamnt  +downstreamnt
atggacccctggcaccacgacccaagagaccccctggagaagattagtcctggaaccttc
ctcttccacttcccaagcctgtgctatgcttcagggcggaaactctgctacctctgtttc
catgtggaaggagagggggaggaggactcctggtatgacctgggcgtctttcagaacaag
gtctatccccaggctccctgccacgcagaagcctgcttcctctcttggttccgtgaccag
aatctgccccctgaagagcattaccgtgtcacctggttcttatcgtggagcccctgcccc
acctgcgcagaggatgtgattgagttcctggaggaatacaggaacgtcacgctgagcatc
tataccgcccgcctctactacttctgggacccagatttccaggacgggctctacaagctg
tggtgtgcaggggtccatctggacatcatgtcctttgaagattatgaatactgttgggaa
acctttgtggaccacaaggggatgcgcttccagagttgggatctattaagagataatgat
ttgctggccgaagagctccaggatattcttggaaagtgcttgctcaccgcgtgggctaac
tggctactttcgcttctgtttgaatgcttgcttaatggcgcgtggcggctcccaacacca
atcagaagcacaatgaatccactacgacgagaaatattctaccatcagtttggcaaccag
ccccgggccccgaggcccttccaccggaggaagacctacctgtgctaccagctgaaacca
catgagggccacataaagcgccttcaaaacaagaaaaagcgccatgcagaaatccggttt
attgaccatatcagggcactgcagctggaccggtcccagagatttgaaatcacctgctac
ctgacgtggagcccctgccccagctgtgcgaaggaactggctgtgtttgtccaagaccat
ccccacatccgcctgcggctctttgcctcccgcctgtatttccactggcgctggaagcat
caggaggggctgaggcttctgcatagatccgggatctccgtggccgtcatgagactccag
gagtttgaggactgttggggcaattttgtggaccaccagggcgagcctttccagccctgg
cacaagctggaacagtacagtgaaagcataactcgtcggcttcggaggatccttgagcac
ccccagaataatttagagactaacttcagaaatttgcacatttga

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