Mustela nigripes (black-footed ferret): 132023508
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Entry
132023508 CDS
T09425
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
mnp
Mustela nigripes (black-footed ferret)
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mnp03036
]
132023508 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
mnp03400
]
132023508 (SMCHD1)
Chromosome and associated proteins [BR:
mnp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
132023508 (SMCHD1)
DNA repair and recombination proteins [BR:
mnp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
132023508 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
132023508
NCBI-ProteinID:
XP_059265279
LinkDB
All DBs
Position
8:complement(39662341..39809421)
Genome browser
AA seq
2002 aa
AA seq
DB search
MAAAGGGGPSVGTGEDGGGDGCRTVYLFDRRDKESELGERVLQVEERSDYARFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLILEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIEDDMQTLYINTASDSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLSPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGVITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLMDPPFRVGVPFNI
PLEFQDEFGHTSQLGSDIQPVFEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDTQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITTQ
PKLIVHCKFLGAPNLPVYVVDCSSSGTSILTGAAIQVQNIKKDQTLKAKIEIPSCKDVVP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHI
TSTLADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTIQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGIAGIGLDS
SHLKTTFQENTQSISVKGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
DLKESIPVINGRELQNPLIVQLCDQWDNPAPVSQVKISLMKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHMMQVRAIYNKNIIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GSIFTDFMITVISEDDSIIKNINPARISMKMWQLSNSGNRPPANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPKIQPATPAVS
NVRSVASRTLVKDLHLTITDNYNNHTGIDLVGTVVATIKGSNEEDTDTPLFIGKVRTLEF
PFVKGSAEITNLVLAENSPGRDSTEYFIIFEPQLPALSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQLSKNITVYRSLFEASNQLLDEMKCQVEEAKLKEAQLQNELKTHNIDIPTTQ
QMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGRLYFKP
IGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLVLGEQIDLLQQYRTAVNKLNNVI
EDLNRQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPTKVEMTDCP
IPPKRMRREASRQNRIITKSDV
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccttcggtggggaccggagaggacggcggaggcgac
ggctgcaggacggtgtacttgtttgaccggcgcgataaagagtccgagctcggggagcgg
gtgctgcaggtcgaggagcgctcggactacgcaaggttccgcgcctctgtgtgtcagaca
cttggcatttcacccgaagagaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgacactgttaaagatggagtcactctatacctgctacagtcagtt
aatcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgcctttt
gctcttgcagaattaattgacaattcattgtctgctacttctagaaacactggtattaga
agaatacagatcaaattgctttttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttatca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgtccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gaacttgtgctttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatcttagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggagtacagccagaacacatacagtacttgaaaaattatttccttctttggaca
agacagttagcgcatatttatcattactatattcatggcccaaaaggaaacgaaaaacgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatagaagatgacatgcagacgttgtat
ataaacacagcatctgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattattcgatatcaccctttcttatatgatagagaaacttaccccgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgtttcatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagactttgactggtgtactcctccaaagaagagagggctttcaccaatt
gaatgttataatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacacgctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctttatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacatcttttaaaggagtaatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcgacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacacttcctctc
ttttatggaagcatagtaaaattttttctctatggtgatcatgatggagaagtatatgcc
acgggaggagaggttcagattgcaatggaacctcaggcactgtatgatgaaataaaaact
gtgccaattgcaaagctcgataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattagacctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaaaggggaagcaatgcaaaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatattacattcttcaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcag
aagttggggaattacacattgaaattacaagttgtattgaatgaaagtaatgcagacact
tatgcaggaagaccactaccatcaaaagcaattaaattttctgttaaagagggtaaacca
gagaagttttcatttggtcttatggatcctccttttcgtgttggagtcccattcaatatc
cctctggaatttcaggatgaatttggtcatactagtcaactaggaagtgatattcagcca
gtttttgaagcaagtggtttatctttacattatgaagaaataaccaaaggaccgaattgt
gtgattcgaggtgttacagctaagggccctgtaaactcttgtcagggcaagaattttaat
ttgaaggttattctgccgggcttaaaagaagacacacagattttaaaaattagattacta
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacaacacag
ccaaaattgattgttcattgtaagtttttaggtgctccaaaccttccagtctacgttgta
gattgcagcagttctggaaccagtattttaacaggagctgctattcaagtacagaacatt
aaaaaagaccagactcttaaagcaaaaattgaaatacctagttgtaaagatgtggtaccc
gtggagaagactattaagttgcttcctagtagccatgttgcaagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gatattatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaattcatata
acatcaactttagcagataaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctccttcctgatgtacaagtaccaacatctgtgaaagatatgcggtat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgagttaaaaggaggaaaaacaatacagatg
ggccaagagcttcaaggagaaatagttgtaatagttacagatcagtatggaaatcagata
caggcattttcaccaagttctttatctgccttgggaattgctgggattggacttgatagc
tctcatttgaaaactacctttcaggaaaatacacaaagtataagtgtaaaaggcatcaaa
tttattccaggccctcctggaaataaggatctttgttttacctggcgtgaattttctgac
tttattcgagtgcagctaatttctggaccaccagcaaagcttctccttatagactggcca
gacttaaaggagtccattccagtgattaatggaagagaactacagaatccactcattgtt
caactttgtgaccagtgggataatccagcacctgtatcacaggttaaaataagtctcatg
aaagccaataatttaaagctcactccttcaaaccaacagcataaaacagatgaaaggggc
agggctaatttgggagtgttcagtgtttatgctcctagaggagaacatatgatgcaggtt
agagccatctataacaagaatatcatagaaggacctataattaagttaatgattcttcca
gatcctgaaaaacctattcgtctcaatgttaagtatgacaaggatgcttcctttttagca
gggagtattttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtatttccatgaaaatgtggcagctgtctaacagtgggaaccga
ccaccagcaaatgcagaaacatttagttgcaataaaataaaagataatgacaaggaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtgggaacatactgtatccag
tttgggtttatgatggataaagcaaatattcttaacagtgaacagattatagttgatgtt
ctgcctaatcaacctgtgaagttagttcctaaaattcagccagctacaccagctgtttca
aatgttcgctccgttgccagtaggaccttggtcaaagatttacatcttactattacggat
aactataacaatcatactggaattgatttggttggcactgtagtagctaccattaaaggt
tctaatgaggaagatacggatacaccactgtttatcgggaaagtgagaacactcgaattt
ccctttgtgaaaggttcagctgaaattacgaatctagtgctggcagaaaatagtcctgga
agggatagtactgaatattttattatatttgagcctcagctaccagctctatcaagaaca
ttagaaccatatatcctaccgtttatgttttacaatgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccagttatctaagaatattacagtgtatagaagttta
tttgaagccagcaaccagcttcttgatgaaatgaagtgccaagttgaagaagcaaaatta
aaagaggctcagttgcaaaatgaactaaaaacacataatattgacattcctacaacacaa
cagatgccacacattgaagcacttttgaaaagaaagttatcagaacaggaagaactgagg
aaaaaaccgagaagatcatgtactcttccaaactatactaaaggcagtggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgatagagctgcaatggttatttcttgg
catctggcaagtgacatggactgtgttgtcactctgaccactgatgccgcacgtcgtatc
tatgatgaaacccaaggtcgtcagcaggtgttgcccctggattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaacggaagattgtattttaaaccc
attggagatccagtctttgctcgagatttgttaacatttccagataatgtagagcattgt
gaaacagtgtttggtatgctgttaggagacaccattattttggataatttggatgctgcc
aatcattatagaaaagaggttgttaaaattacacactgtcctacactgctcaccagagat
ggagatcgcattcgaagtaacggaaagtttgggggccttcagaataaagctcctccaatg
gataaacttcggggaatggtatttggagctccaataccaaaacagtgcctggtcttaggg
gaacaaatagatcttcttcaacagtatcgtactgctgtgaacaaattgaacaatgtgata
gaggaccttaatcgtcagttagagtaccttcacactcctgatatgaagaagaaaaaacaa
gaacttgatgaacaagagaaaaatctgaaactgattgaacagaaactaggtatgactccc
acacgtaagtgtaatgactcattgcgccatccaacaaaggttgaaatgacagattgtcca
attcctcctaaaagaatgagaagagaagcttccagacaaaataggattataaccaaatca
gatgtatga
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integrated database retrieval system
