Mustela nigripes (black-footed ferret): 132024675
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Entry
132024675 CDS
T09425
Symbol
RIGI
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp04064
NF-kappa B signaling pathway
mnp04622
RIG-I-like receptor signaling pathway
mnp04623
Cytosolic DNA-sensing pathway
mnp05160
Hepatitis C
mnp05161
Hepatitis B
mnp05162
Measles
mnp05164
Influenza A
mnp05168
Herpes simplex virus 1 infection
mnp05169
Epstein-Barr virus infection
mnp05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
132024675 (RIGI)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
132024675 (RIGI)
04623 Cytosolic DNA-sensing pathway
132024675 (RIGI)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
132024675 (RIGI)
05160 Hepatitis C
132024675 (RIGI)
05171 Coronavirus disease - COVID-19
132024675 (RIGI)
05164 Influenza A
132024675 (RIGI)
05162 Measles
132024675 (RIGI)
05168 Herpes simplex virus 1 infection
132024675 (RIGI)
05169 Epstein-Barr virus infection
132024675 (RIGI)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mnp04054
]
132024675 (RIGI)
Enzymes [BR:
mnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132024675 (RIGI)
Pattern recognition receptors [BR:
mnp04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132024675 (RIGI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
CCDC85
CBP110
Motif
Other DBs
NCBI-GeneID:
132024675
NCBI-ProteinID:
XP_059267500
LinkDB
All DBs
Position
9:38202970..38259224
Genome browser
AA seq
929 aa
AA seq
DB search
MSAEDRRNLHAFRDYVVKTLDPTYILSHMAPWFKDDEVQHIQAEKNNKGTMEAASLFLKF
LLERQEEGWFRGFLDALGHAGYSGLYEAIETWDFQKIESLEEYRSLLKRLQPEFKTTVNP
KDILPEISQCLISQECEEIIQVCSNKGLMAGAEKMVECLLRSDKENWPKTLKLALEMEES
KFSELWIVDKDAKNVEPKVLEDDEMETSDIQIFYKEESECQNLSQSSSPPSAASPTCTPL
KPRNYQLELTLPAKEGKNTLICAPTGCGKTLVSLLICEHHLKKFPQERKGKVVFFAIQLP
LYEQQKSIFSDYFEKLGYKVAGISGVTAETVSVEQIVENNDIIILTPQILVNSLRNGTLP
SLSVFTLMIFDECHNTGKNHPYNMIMFNYIDQKLGGSSDPLPQVIGLTASVGTGDAKNTK
EAMEYICKLCASLDTAVIATVKDNLEELEEVAYKPQKFFRKVESRTTDRFKCIISQLMRE
TESLAKSIFDELGTVTLENVSQIQNRNFGTQKYEQWIVSVQKACMVVQLPDKDEESRICK
ALYLYTSHLRKYNDALMINEHARMKDALDYLKDFFADVRSAGFDETEQDLTRRFEEKLKE
LESVSMDLSNENPKLKDLSFILQEEYHLNPESRTILFVKTRALVDALKKWIEENSELSFL
NPGILTGRGKTNQNTGMTLPAQKCALDAFRTDGDKKILIATSVADEGIDIAECNLVILYE
YVGNVIRMIQTRGRGRAKGSKCFLLTSNADVIEKEKINIYKENMMNESILRLQTWNEAVF
KEKILQIQMQEKFIRDSQAKVEPVPDKENKKLLCRKCKGFACYTADIRVVEDCHYAVVGD
AFRKCYVSKLHPKPKTYGHFEKKAKIFCARENCCHDWGIHVKYKTFEIPVIKIESFVVED
IATGAQKLYAKWRDFPIEKIPFDATEMSK
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgaggatcggcggaatctgcacgccttccgggattatgtcgtgaagactctg
gaccctacctatatcctaagccacatggccccctggtttaaggacgatgaggtgcagcat
attcaggctgagaaaaacaataagggcacgatggaggctgcctcactttttcttaagttt
ctattggagcgccaggaagaaggctggttccgtggctttttggacgcccttgggcatgca
ggttattctggactttatgaagccattgaaacttgggatttccaaaaaattgaaagtcta
gaggagtacagatcacttctaaagcgtttacaaccagaatttaaaaccacagttaatcca
aaagatatccttcctgaaatatcccaatgtttaattagtcaggagtgcgaagaaattata
caggtgtgttccaacaaggggctgatggcaggtgcagagaaaatggttgaatgccttctc
agatcagacaaggaaaactggcccaaaactttgaaacttgctttggagatggaagagagc
aagttcagtgaactgtggattgttgacaaagatgcaaaaaatgttgaaccaaaagttctt
gaggatgatgaaatggaaacttctgacatacagattttctataaggaagaatcagaatgc
cagaatcttagtcagagctcatctccaccctcagcagcctctcctacctgcacgcctctg
aagccaagaaattaccaactagagctcactttgcctgctaaggaaggaaaaaacacatta
atatgtgctcctactggatgtggaaaaacccttgtttcccttcttatatgtgaacatcat
cttaaaaaatttccacaagaacgaaaagggaaagttgtcttttttgctattcaactccca
ctatatgaacagcagaaatccatattctccgattactttgaaaaacttgggtataaagtt
gcaggtatttctggagtaacagctgagactgtctcggtggaacagattgttgagaacaat
gacatcatcattttaactccacagattcttgtgaatagccttagaaatgggacccttcca
tcactctctgtctttactttgatgatatttgatgaatgtcacaacactggtaaaaaccat
ccttacaatatgatcatgtttaattatatagatcagaaacttggaggatcttcagaccca
ctgcctcaggtcattgggctgactgcctcggttggcactggggatgccaaaaacacaaag
gaagccatggagtatatctgcaaactgtgtgcctctcttgacacggcggtgatagcaaca
gtcaaagacaacttggaggaactggaagaagttgcttataagccccagaagtttttcagg
aaagtagaatcccggactactgacagatttaaatgcatcatatctcagctgatgagggag
acagagagtctggcaaagagtatctttgatgaactcggtaccgtaactcttgaaaatgta
tctcaaattcaaaataggaattttggaacacagaaatatgagcagtggatcgtttccgtt
cagaaagcgtgcatggtggttcagttgcccgacaaagatgaagagagcaggatttgtaaa
gccctgtatttgtacacttcccacttgcggaaatataacgatgccctcatgatcaatgag
catgcacggatgaaagatgctctggattacttaaaagacttctttgctgacgtccgaagt
gcaggatttgatgagactgagcaggacctcactcgtagattcgaagaaaaattgaaggaa
ctggaaagtgtttctatggatctcagcaacgagaaccctaaactaaaagatctctccttc
atcttgcaagaagagtaccacttaaacccagagagtagaaccatcctctttgtgaaaacc
agagcacttgtggatgctttgaagaagtggattgaagaaaattctgagctcagctttcta
aaccctggcatattgactggacgtggcaaaacaaatcagaacacgggaatgacgctccca
gcacagaagtgtgcattggacgcatttagaaccgatggagataaaaagattctgattgcc
acttcagttgctgatgaaggcatcgacattgctgagtgtaatttggtcatcttgtatgag
tatgtgggcaatgtcatcagaatgattcaaaccagaggccgaggaagagcaaaagggagc
aagtgcttccttctgaccagcaatgctgatgtaattgaaaaagaaaaaataaacatatac
aaggaaaacatgatgaatgaatccattttaaggcttcagacgtggaatgaagcagtattt
aaagaaaagattctccagatacagatgcaagaaaaattcatcagggatagtcaagcaaaa
gtagaacctgtacccgataaggagaataaaaaactgctttgcagaaagtgtaagggcttt
gcgtgttacacggctgacatcagagtggtagaggactgccattacgctgtggttggagat
gctttcaggaagtgctatgtgagcaaattacaccccaaaccaaagacctatgggcatttt
gagaagaaagcaaagatcttctgtgccagagagaactgctgccatgactggggaatccat
gtgaagtataagacatttgagattccagttataaaaatagaaagctttgtggtggaggat
attgcaactggagctcagaagctatatgcaaagtggagggattttcctattgagaagata
ccctttgatgctacagaaatgtccaaatga
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