Maricurvus nonylphenolicus: R50073_21930
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Entry
R50073_21930 CDS
T10757
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mny Maricurvus nonylphenolicus
Pathway
mny03030
DNA replication
mny03410
Base excision repair
mny03420
Nucleotide excision repair
mny03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R50073_21930 (ligA)
03410 Base excision repair
R50073_21930 (ligA)
03420 Nucleotide excision repair
R50073_21930 (ligA)
03430 Mismatch repair
R50073_21930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mny03032
]
R50073_21930 (ligA)
03400 DNA repair and recombination proteins [BR:
mny03400
]
R50073_21930 (ligA)
Enzymes [BR:
mny01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R50073_21930 (ligA)
DNA replication proteins [BR:
mny03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R50073_21930 (ligA)
DNA repair and recombination proteins [BR:
mny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R50073_21930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R50073_21930 (ligA)
MMR (mismatch excision repair)
DNA ligase
R50073_21930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R50073_21930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
BFM16010
LinkDB
All DBs
Position
2561101..2563152
Genome browser
AA seq
683 aa
AA seq
DB search
MSSSQTVSPEILAEIDTLKSQLNYHNYRYYVLDDPQIPDAEYDRQLQRLKTLENENPELI
TEDSPTQRVGAEPLSAFTQVTHEVAMLSLDNAFDDDDMLDFNRRAKDRLKQDEDIEFACE
PKLDGIAVSLLYEKGLLVRGATRGDGTTGENITLNVRTIPSIPLTLIGEGFPEILEVRGE
IYMPKAGFEALNERAREQGEKLFVNPRNAAAGSLRQLDPKITASRPLEMCAYSVGRVDGG
EMPDRHTDALEQLHQWGFLINPEMAAVENIQGCIEYYRKLSEKRDQLDYDIDGIVFKVNS
RAVQDRLGFVSRAPRWAIAYKFPAQEEMTLLQDVEFQVGRTGAITPVARLEPVFVGGVTV
SNATLHNRDEIERLGVKVGDTVIVRRAGDVIPQIVSIVKDKRPGDAADIVFPEQCPVCES
PVETMPGEAVARCTGGLICEAQRKEAIKHFASRKAMDVDGLGDKLVEQLVDENRIQSVAD
LYTLDWQSIATLERMGEKSARNLVAALETSKQTTLERFLFALGIREVGEATARSLTRHFG
NLPAVIAASEDQLQQVDDVGPVVAHFIAEFFDQPHNCEAVEALQAAGVQWDDVSVEERHE
PLADKTYVVTGSFSIVKRNDAKKMLQDLGAKVAGSVSAKTHCVVVGGGATNNSKFVKAQE
LGIDTMTEEELVALLQEHGVYEA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagccaaactgtctctccagaaatacttgcagaaatcgatacgctgaaaagt
cagctgaattaccataactatcgctattacgttttagacgatccgcaaattcctgatgcg
gaatatgatcgccagttgcagcgtttaaagacgcttgaaaacgaaaatcctgaattaatt
actgaagattcacccacacagcgggtgggggctgagcctttgtcggcgtttacgcaggtg
acccatgaagtggccatgctgtcattggataatgcctttgatgatgacgatatgctcgac
ttcaatcgtcgcgccaaggatcgtttaaagcaggatgaagatattgaatttgcctgcgag
cctaaactcgacggtattgcggtaagcctgttatacgaaaaaggcttgttggtgcgcgga
gctacccgcggtgatggtaccaccggtgaaaatattacccttaatgttcgcaccattcct
tcgattccgctgacgctgatcggtgaagggtttcccgaaatccttgaagtgcgtggcgag
atttacatgcccaaggccggctttgaggccttaaatgagcgggcgcgcgaacagggggaa
aagctgtttgttaatcctcgtaatgcggctgccggtagcttgcgccaattagatcctaaa
atcactgcttcacgtccgctggagatgtgcgcttacagtgtcggccgggtcgatggtggt
gaaatgcctgatcgtcatacagatgcgctcgaacagttacaccaatggggattcctgatt
aacccggaaatggccgctgttgaaaatattcaggggtgtattgaatattaccgcaagctg
tcagaaaaacgtgaccaacttgattacgatatcgatggtatcgtttttaaagttaacagt
cgtgccgtgcaggataggctgggttttgtgtcccgggcacctcgctgggccattgcttat
aaatttcctgcgcaggaagaaatgacgctacttcaagatgtggagtttcaggtagggcgt
actggggctattacaccggtagcgcgtttagagccagtatttgttggcggtgtaacagtc
tccaatgcaacgctgcacaaccgcgatgagattgagcgtttgggcgttaaggtgggcgac
acggtcattgtacgtcgtgccggcgatgtgattccgcaaattgtttccatcgttaaagat
aaacgtcctggtgatgccgctgatattgtttttcctgagcagtgtcccgtctgcgaatca
cccgttgaaaccatgcccggcgaggctgttgctcgctgtaccggtggcttaatttgtgag
gcccagcgtaaagaggcgatcaaacattttgcatctcgcaaggcgatggatgttgatggt
cttggcgataaactggtggaacaacttgtcgatgaaaaccgcattcaatctgtagcagat
ctctacaccctggattggcagtcgattgcgacgctggagcgtatgggcgaaaagtcggcg
cgtaatctggtagccgctctggaaaccagcaagcaaacaacgcttgagcgttttctgttt
gcgctgggtattcgagaagtgggggaggccacggcgcgtagcttgacccgccattttggt
aatctccctgcggttatagctgccagtgaagaccaattacagcaggttgatgatgtaggt
cctgtggttgcacactttatcgctgaattttttgatcaaccccacaactgtgaagctgtg
gaggctttacaggccgctggtgttcagtgggatgatgtcagcgttgaagagcgtcatgag
ccactggcagataaaacctatgtggttaccggctctttctctattgttaagcgcaatgat
gccaagaaaatgttgcaggatttgggggctaaagttgcaggttctgtttccgccaaaacc
cattgtgtagttgtcggtggcggagctactaataactccaaattcgtcaaagcccaagag
ttgggcatcgacaccatgactgaagaagaattggttgcgctacttcaagaacacggtgtc
tacgaggcataa
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