Macrobrachium nipponense (oriental river prawn): 135207957
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Entry
135207957 CDS
T09903
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
135207957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnz03400
]
135207957
Enzymes [BR:
mnz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135207957
DNA repair and recombination proteins [BR:
mnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
135207957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
DNA_ligase_IV
LIG3_BRCT
mRNA_cap_enzyme
DUF7004
Motif
Other DBs
NCBI-GeneID:
135207957
NCBI-ProteinID:
XP_064096047
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All DBs
Position
34:19485311..19621458
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AA seq
882 aa
AA seq
DB search
MSKNVSVARLVPWSQVCKMLDIVQSAVKGNKKEMLLKFITQYRDLLRKSTERNPQAPDSF
FPMLRVLLPALDRARGAYGVKERKLAELYIRILGLKKDGTDGQKLLNFRKPKSLAAGETG
DFADVAYYVLRSRCPDAGKMTLEDVDDRLTGIAENYAAKNHEEVERSLLVMLRSMTATEQ
KWLIRVLLKDMRLGIGQGTIFNAWHPDAKDLYDVNNSLEKVSVALRDPSVRLHEIEVSLF
SAFRPMLAERALLEKVETQMNHKAYYAETKYDGERSQIHKKGRVYKYFSRNGFDFTDNFG
ADPKSGLFTPYLHGLFLPSVEDVILDGEVVSWSKTHKSIISKGEHMDVKNLREDGDYQVC
LCVFDIIYLNGEVLTNQPLSERLSKLKGVITPHEGRVIISPRTTVQSKEDVIKILNEAID
NREEGVVLKDPDSVYRPASRKAGWIKVKPEYVDSLVPELDLLIIGAYYGKGRRQGVLSHF
LLAVAVETEPGGKPREFHSICRVGSGYTVAELSDLVDKLSPHTSRQQPSGVIVSREKPDI
WINPVKSCVVQVRAAEVVKSLLYQTGVTLRFPRVEKVRYDKPWYDILTTKELNELEQEAS
GKLATKHYIDTGDEPAAKRKTPSKADHPSLPSHFRPADLTKVVKKADVLAGKEICVMGGD
ESLTKQQIEKLIVEHGGSFIQHPRKDTFCIVSDAFSVRVNNYVKTHNIVRPSWIELCVKK
SALMPFGPLEVLSLLDGKRDSMKELFDEFGDSYTDPLDEQTLKRIMCNMKKKVKSWKELS
PEEMYELDQELCEPDNINGLFRVIAAHFYDCDCNDLPALAFRLHGGTPERDLSKASHVII
TNSDKLTLRPSELAGQHLVTSDWIYDCIEKRKLLEARHYAPT
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaatgtatcagttgctcgtcttgtgccttggtcacaagtctgcaaaatgttg
gacatagttcagtctgctgtaaagggaaacaaaaaggaaatgcttttgaaattcatcaca
cagtatcgagatcttctcaggaagagtacagaacgaaatccacaagctcctgacagtttc
tttcctatgcttcgagtgttactaccagctctagatcgtgcaagaggtgcatatggtgta
aaggaacgtaagctggcagaactttatatacgcatattgggcttaaaaaaggatggaaca
gatggtcaaaagcttttgaattttagaaaaccaaagtcgttagctgcaggtgagactgga
gattttgcagatgtagcgtattatgtacttagaagtcgatgccctgatgcaggaaaaatg
accttagaggacgttgatgatcgtctgacaggtattgccgagaattatgctgctaaaaat
catgaggaagttgagcgttcactattggtaatgctgcgcagtatgaccgcaacagagcag
aaatggctgattcgtgtattactcaaagatatgaggcttggaattgggcaaggaacaatc
ttcaatgcttggcatcctgatgccaaggacttatatgatgttaataatagtttggagaag
gtttcagtagcattgcgagatccaagtgttcgattacatgaaatagaggtatctttattc
tctgcctttcgtcccatgcttgctgaaagggcattgttagagaaagttgagactcagatg
aatcacaaggcatattatgctgagacaaagtatgatggagaaagatctcagattcacaag
aaaggcagagtttataagtatttttcaaggaatggttttgactttactgacaactttggt
gccgacccaaaatctggactttttacaccttacttacatggattgtttcttccaagtgtt
gaagatgttatcttggatggggaagtagtttcttggagtaaaactcataaatcaattatc
agcaaaggtgagcacatggatgttaagaatttgcgtgaagatggagattatcaagtttgc
ttatgtgtttttgacatcatttatttgaatggtgaagttttgaccaatcagccattatca
gagagattaagcaaactgaagggtgtgatcactccccatgagggccgtgtaattatatcc
ccaaggactacagtacagtcaaaagaggatgttattaaaattctgaatgaagcaattgac
aatcgagaagagggtgttgtcttaaaggacccagattctgtttatcgtccagcttctcgt
aaggcaggatggattaaagtgaagcctgagtatgttgactcacttgtgccagagctggat
ttattgattattggtgcatattatggaaagggaagaagacaaggtgtcttgtctcatttc
ttgttggcagttgctgttgaaacagagccaggtggaaagccacgagagtttcattcgatt
tgccgtgttggatcaggttacacagttgctgaactaagtgaccttgttgacaaactttct
cctcatacaagtagacagcagccttcaggagttattgtctccagagaaaaaccagatatc
tggataaatcctgttaagtcttgcgttgttcaggttagagctgcagaagtggtgaagagt
ctcctatatcagactggtgtaactttaagatttccccgagtggagaaagttcgttatgac
aaaccttggtatgatatactgacgacaaaggaactaaatgaattggaacaggaagcaagt
ggtaaacttgcaaccaaacattacatcgacacaggtgatgagcctgcagccaaacggaaa
actccatcaaaagcggatcatccctcattaccttcacattttagaccagctgatttaaca
aaagttgtaaagaaagctgatgtgcttgctggcaaggagatttgtgtcatgggaggtgat
gaaagtttgactaaacaacaaatagaaaaattaattgttgagcatgggggatcttttatt
cagcacccaagaaaggataccttctgcattgtgtcagatgctttctctgttcgagtaaat
aattatgtcaaaactcacaatatagtgcgcccatcttggattgagctgtgtgttaagaag
agtgccttgatgccttttggacctttagaagtgttgtcacttcttgatgggaaaagagac
agcatgaaggagctctttgatgaatttggtgacagttacaccgaccccctggatgaacaa
acgctgaagaggataatgtgtaatatgaaaaaaaaggtaaagtcatggaaggagctgtcg
ccagaagaaatgtatgagcttgatcaagagttgtgtgaacctgacaacattaatggtctg
tttcgagtgattgctgctcatttctatgattgtgattgtaatgatctcccagctcttgct
tttaggctgcatggtggaacaccagagagggatctgtccaaagctagtcatgtaatcatt
acaaatagtgataaacttacacttcgacctagtgagttagctggccagcatttggtgacc
agtgattggatctacgactgcatagaaaagagaaaacttttagaagcaagacattatgca
ccgacatag
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