Metamycoplasma orale: NCTC10112_00669
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Entry
NCTC10112_00669 CDS
T08183
Symbol
lig_2
Name
(GenBank) NAD(+)-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mob
Metamycoplasma orale
Pathway
mob03030
DNA replication
mob03410
Base excision repair
mob03420
Nucleotide excision repair
mob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10112_00669 (lig_2)
03410 Base excision repair
NCTC10112_00669 (lig_2)
03420 Nucleotide excision repair
NCTC10112_00669 (lig_2)
03430 Mismatch repair
NCTC10112_00669 (lig_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mob03032
]
NCTC10112_00669 (lig_2)
03400 DNA repair and recombination proteins [BR:
mob03400
]
NCTC10112_00669 (lig_2)
Enzymes [BR:
mob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10112_00669 (lig_2)
DNA replication proteins [BR:
mob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10112_00669 (lig_2)
DNA repair and recombination proteins [BR:
mob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10112_00669 (lig_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10112_00669 (lig_2)
MMR (mismatch excision repair)
DNA ligase
NCTC10112_00669 (lig_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10112_00669 (lig_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
Nlig-Ia
HHH_5
DNA_ligase_ZBD
DUF6982
Motif
Other DBs
NCBI-ProteinID:
VEU56684
UniProt:
A0A448ZV60
LinkDB
All DBs
Position
p2:complement(19450..21456)
Genome browser
AA seq
668 aa
AA seq
DB search
MNAKEKNIREEILNLQKKIAEWDNAYYNLDNPIVTDEIYDTEFIRLQKLEKQYSYLLTYE
EVKNSPTQKIDAKSLSIFDKVIHKKPMLSLNKAYSIEEIKKFIKNIEKYTNDFSFLIEPK
IDGLSISLTYENGKLIRGVTRGDGITGEDVTKNILQINDIPKEIEYKHKIELRGEIYLSI
SRFNELNEENLKNNLPPLANPRNAAAGTLRQLDSNIVSQRGLSSFIYFVVDAPSHNIFTM
EDAFCFLKKNNFHVVKDYKLAKNINQIEEYINNFPELKKTFDFEADGVVIKLNEIKWWNK
IGQTQKFPHYAIAFKFEPNIEITTIKKIFITIGRTGLVTYNGQVKTVEISGSKINFATLN
NFNYIKELNLNVGDEVYIKKAGEIIPCIIGLVNPKGKPDYFKRIETCPYCNSKLIESETF
LEEYCENYNCPEIIKKQLIHFSSKECMNFFSMGEKIVEKLYENKLILNPLDFYNLKNNKN
ELTQLEKLGTKSIMKILNSIEDSKKLGLDKFIFALSIKHIGQKVASFIASKVQKLSEFLK
FDFDSLIQYNEIGPKIIDSVKKWLSVDNNKKLINDFLNSGMNFEHISNIKSKLLDGINIV
ITGTLSKPRNYFEELIKANNGNIVNSVSKKTSYVLCGENPGSKLDKANELNVKVISENDL
IDMLKNKN
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctaaagaaaaaaatattagagaagaaattttaaatcttcaaaaaaagattgct
gaatgagacaatgcttattataatttggataatcctattgtaactgatgaaatttatgat
actgagtttattagacttcaaaaattagaaaaacaatatagttatttgctaacttatgaa
gaagttaaaaactctccaacgcaaaaaattgatgcaaagtctttatcaatatttgataaa
gtaattcataaaaaaccaatgctttctttaaacaaagcatattcaattgaagaaattaag
aaatttattaaaaacattgaaaaatatactaatgatttttcatttttaattgaacctaaa
attgatggcctttctatttcattaacttatgaaaatggaaaactaattagaggtgtgact
agaggagatggaataacgggagaagatgttacaaaaaatattttacaaattaatgatatc
cctaaagaaatagaatacaaacacaaaatcgaattaagaggagaaatatatttatctatt
tctagatttaatgaattaaatgaagaaaatttaaaaaataatttaccgcctttagccaac
ccaagaaatgcagcagctggcactttaagacaattagattctaatattgtttctcaaaga
ggtttgtcatcttttatatattttgtagtcgatgctccaagtcataatatttttacaatg
gaagatgccttttgtttccttaagaaaaataattttcatgttgtaaaagattataaacta
gctaaaaatattaatcaaattgaagaatatataaataattttccagaacttaaaaaaaca
tttgattttgaagcagatggtgtagttattaaattaaatgaaattaaatgatgaaataaa
atagggcaaactcaaaagtttccacattatgcaattgcttttaaatttgaaccaaacatt
gaaattacaacaattaaaaagatatttataactattggaagaaccggcttagtaacttat
aatggccaagttaaaactgtcgaaatttctggttcaaaaataaactttgcaacattaaat
aattttaattacattaaagaactaaatttaaatgttggcgatgaagtttatattaaaaaa
gctggtgaaattattccttgcattataggactagttaatccaaaaggtaaacctgattat
tttaaaagaatagaaacttgtccatattgtaattctaaattaatagaaagcgaaacattc
ttagaagaatattgtgaaaattacaattgtccagaaattataaaaaaacaactaattcat
ttttcttcaaaagaatgtatgaatttcttttcaatgggcgaaaaaatagtagaaaaatta
tatgaaaataaattaattcttaatccactagatttttataatttaaaaaataataaaaat
gaactaacacaattagaaaaattaggaactaaatctataatgaaaattttaaattcaatt
gaagattcaaaaaaattaggacttgacaaatttatttttgctttatctataaaacacata
ggacaaaaagttgcaagctttatagcttctaaagttcaaaaactttctgaatttctaaaa
tttgattttgattctttaattcaatataatgaaattggtccgaaaattattgattcagtt
aaaaaatggctatcagttgataataataaaaaattaattaatgactttcttaatagtgga
atgaatttcgaacatatttcaaatataaaaagcaaattattagatggaattaatattgtt
attacaggaacattatctaagcctagaaactattttgaagaattaataaaggcaaataat
ggaaatatagtaaatagtgtatctaaaaaaacttcttatgttttatgcggagaaaatcct
ggatctaaattagataaagctaatgaattaaatgttaaagttatctctgaaaatgattta
attgatatgctaaaaaataagaattaa
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