Malania oleifera: 131165470
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Entry
131165470 CDS
T09312
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mof
Malania oleifera
Pathway
mof03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
131165470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mof03400
]
131165470
Enzymes [BR:
mof01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
131165470
DNA repair and recombination proteins [BR:
mof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
131165470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
131165470
NCBI-ProteinID:
XP_057979304
LinkDB
All DBs
Position
10:complement(86952694..87059687)
Genome browser
AA seq
1162 aa
AA seq
DB search
MSDKTKFSVLCSLFDWVQRSKSSAKKRSKFRKYLDTFCRSGDYFSSIRLILPSLDRERGT
YGLKESVLATCLIDALGMSRDSEDALRLISWRKGGAKTGANAGNFALVAAEVLQHRQGMA
SGGLTIMELNDLLDRLALSENRAEKTSVLSTLIKKTNALEMKWIVMIILKDLKLGVSEKS
IFHEFHPDAEDLFNVTCDLRLVCEKLRDRSQRHKRQDIEVGKAVRPQLAMRVADVTAAWK
KLHGKDMVVECKFDGDRIQIHKNGTKIHFFSRNFLDHFEYGHAMSDIIIQNILVDRCILD
GEMLVWDAPLNRFAEFGSNQEIAKAAKDGLDSDRQVFFYVAFDILYAGDTSVIHQSLKER
HELLQRVVKPLKGRLEILIPNGGLNAHCPSGEPCWSLIAHNMEDVQRFFKEAIENRDEGI
VLKDLSSKWEPSDRSGKWLKLKPDYVHPSSDLDVLIIGGYYGSGRCGGEVAQFLVGLAER
PTSDNYPRKFISFCRVGSGLSDEELDVVVTKLKPYFRKYDYPKKAPPSFYQVTNNSKERP
DVWIDSPDKSIVLSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKHWHECLDVQSFVELV
HSSNGTTQRGINHGSLQESKPKRMTSSRKGEKKDLSVPSHFIHTDVSGIKGETLIFSDMV
FYFANVPPTHSLDFLHKMVVENGGAFSMNLNGSVTHCVAAESKGLKYKAAKLHGDVIHYS
WVLDCCLQKKLLHLQPKYFLFLSDTSKKKLQEEVDEFSDSYFWDLDVADIKQLLSNIRRL
EDSRMVDYYKKKHRPKGKWSCFLDCCIYFHPTAMYLNFDWEVPLEFSMKRMKLEVTMRGG
KISDNIFHATHLVVFSVPGFDVDFESLFRSFSAAEQPLLCSKRLHVVGSQWLVDSLEKEQ
KLQEETYSLKPKDLEKSIIKECKHGLVFDAPRLDSFESHGQSSSRVKEVEHRRGKAAIED
QRNLVLSKREKERKRRMPTGGTTQKGRTGLSRARRTRARVGNKPAKIYENESDKSSASDD
DAGENKMQRGESEFPEMEPRKSLETNDSKMIENSVSSQGRMTAENEIAEDTPLGEWLDQA
GEIKVEGEYGCGDGGRPEKMESSVDPVQAMLIDMIPGLGVNNIETKTDPIQREKRELDPS
AEPGKKKKVSYKDVAGELLKDW
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaaaacaaagttcagcgttctctgcagtctcttcgattgggttcagcgaagc
aaatcttcagcgaagaagcgatccaagttccgcaaataccttgacaccttctgcagatcg
ggcgactacttcagttccatccgcttgatcctgccctccctcgaccgcgagcgcggcacc
tacggccttaaggagtctgtgctcgccacttgcctcattgatgccctcggcatgtccagg
gactctgaagacgccctccgccttatcagttggcgtaaggggggtgccaagactggcgcc
aatgcggggaattttgcgcttgttgctgctgaggttttgcagcataggcaaggaatggct
tctggtggactaacaattatggaattaaatgacttgcttgatcgcttggctttgagtgaa
aatagggcagaaaagacgtcagttctttctacacttatcaagaaaacaaatgcactggaa
atgaagtggattgtcatgataattcttaaagatttgaagttgggagtgagcgaaaaaagc
atctttcatgaatttcatccggatgctgaagacttatttaatgtcacatgtgacttgagg
ctagtttgtgaaaaactgagggatcgaagtcaacgccataagcgccaggacattgaagtt
gggaaagctgttcgtcctcagctagccatgagagttgctgatgtaactgctgcttggaaa
aagcttcatgggaaggacatggttgttgaatgcaaatttgatggtgatcgcatccaaatt
cataagaatggaacgaagattcactttttctcaaggaacttccttgatcactttgaatat
ggacacgcgatgtcagatatcattatacaaaatatactggttgatagatgtatacttgat
ggtgaaatgttggtctgggatgcgccacttaaccgttttgcagagtttggttccaaccag
gaaatagccaaagcagcaaaggacggcctggacagtgaccgacaggttttcttttatgtc
gcatttgatatcctttatgccggtgatactagtgttattcaccaaagcttgaaggaacga
catgagcttctccaaagagttgtgaaacctttgaaaggtcgtctggagattttgatacct
aatggtggtcttaatgctcactgtccctctggggaaccgtgttggtcactcattgctcat
aacatggaagatgttcagaggttttttaaagaagccattgagaatagagatgagggtatt
gttttgaaggaccttagttccaaatgggaaccaagtgatcgaagtggaaaatggttgaag
ctgaagcctgactatgttcatcctagttctgatttagatgttcttatcataggaggatat
tatggctcaggtcgttgtggaggagaggtggctcaattcttggttggcctagcagagcgt
ccaacctctgacaattaccccaggaagtttatttccttctgcagagtgggttctggactg
tctgatgaggagcttgatgttgttgtaactaaattgaagccttacttcaggaaatatgat
tacccaaagaaagcaccaccgagtttttatcaagtaacaaataattcaaaggagagacca
gatgtttggattgacagccctgataagtcaatagtactttcaattaccagcgacattcgt
acaataaggtctgaggtattttccgcaccatatagtttgcgatttccgcgcattgatagg
gtgagatatgacaagcattggcatgaatgccttgatgttcaatcttttgtagaattggtg
cattcaagcaatggtaccacacaaagggggataaatcacggaagcctgcaagaaagtaaa
ccaaagcgcatgacatcctctaggaagggagagaaaaaagatctttctgttccttctcat
ttcatccatactgatgtttctggcatcaagggggagactttaatattttctgacatggtg
ttttacttcgctaatgtgcctcctactcattcccttgatttcttgcacaaaatggtggtt
gagaatgggggcgctttctccatgaatttgaacggttcagttactcactgtgttgcagct
gaaagtaaaggtctcaaatataaagctgcaaagcttcatggggatgttattcattactct
tgggtattggattgttgtttgcaaaagaagcttctccatctacagccgaagtacttcctt
ttcctttctgatacttcaaagaaaaaattgcaagaagaggttgatgagttttctgattct
tacttctgggatcttgacgttgctgacattaaacagctgttgagcaacataagaagatta
gaagattccagaatggttgactattataagaaaaagcatcgtccaaagggaaaatggtct
tgctttcttgattgctgcatttacttccatcccacagctatgtatttaaattttgattgg
gaagttccattggaattttcaatgaagagaatgaagcttgaagtcaccatgcgtggtgga
aaaatcagtgacaatatttttcatgctactcatttagtagtcttttcagtacctggtttt
gacgttgactttgaatctctatttagaagcttttctgcggcagagcaacctctattgtgc
agcaaaaggttgcacgttgtagggtcacaatggttggtagacagcttggagaaggagcag
aagttgcaagaggaaacttatagtctgaagccaaaggacttagagaagtctattatcaaa
gaatgcaaacatggactagtttttgatgctcccagattggacagctttgaaagccatggt
cagtcatcttctcgcgtgaaagaagttgaacacagaagaggcaaagctgctattgaagat
cagagaaatttggtattgtccaagagggagaaagagagaaaaagaagaatgccaactggc
ggaactacacagaaaggaagaacaggtctcagccgagctcgaaggacacgggcaagggtt
ggaaacaaacctgctaaaatatatgaaaatgaatcagacaaaagttctgcttctgatgat
gatgcgggggaaaacaaaatgcaaagaggtgagagtgaattccctgaaatggagccaaga
aaaagtttagaaaccaatgacagtaaaatgattgaaaactctgtatcgtctcaaggaaga
atgacagctgaaaatgagattgccgaggatactcctctgggagaatggcttgatcaagct
ggtgaaatcaaagtggaaggagagtatggctgcggagacggtgggaggcctgaaaagatg
gaatcttctgttgacccggttcaagcaatgttaatagacatgataccaggcctcggagtg
aacaatattgaaactaaaacagatccaattcaacgtgagaagcgagagttagatcccagt
gcagagcctggaaagaaaaagaaagtaagctacaaggatgttgcgggtgagctcctcaag
gattggtaa
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