Microbacterium oryzae: D7D94_04065
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Entry
D7D94_04065 CDS
T09900
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
moj
Microbacterium oryzae
Pathway
moj03030
DNA replication
moj03410
Base excision repair
moj03420
Nucleotide excision repair
moj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
moj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D7D94_04065 (ligA)
03410 Base excision repair
D7D94_04065 (ligA)
03420 Nucleotide excision repair
D7D94_04065 (ligA)
03430 Mismatch repair
D7D94_04065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
moj03032
]
D7D94_04065 (ligA)
03400 DNA repair and recombination proteins [BR:
moj03400
]
D7D94_04065 (ligA)
Enzymes [BR:
moj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D7D94_04065 (ligA)
DNA replication proteins [BR:
moj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D7D94_04065 (ligA)
DNA repair and recombination proteins [BR:
moj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D7D94_04065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D7D94_04065 (ligA)
MMR (mismatch excision repair)
DNA ligase
D7D94_04065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D7D94_04065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QGU26932
UniProt:
A0A6I6DPW2
LinkDB
All DBs
Position
complement(879221..881527)
Genome browser
AA seq
768 aa
AA seq
DB search
MTDADIELPDLTLDEARAEAATLTEQILRARDAYYGDDAALVDDATYDGWLHRLEAIERR
HPELQGQDSPTQTVGAADASMLAPVEHAERMLSLDNVFSLDELSEWCAKTEASAGRSVRW
LTELKIDGLAIALRYENGVLVTAATRGDGRVGEDVTVNALRVAGIPERLTGTGHPPLVEV
RGEVFIPVAAFEELNALQARLRDRVLSEATGRGMDEERAQRSADRRFPAFANPRNAASGG
LRQQLDKKSGMELEAGQARLDSLRLYVHGIGAWPDPPVASQSEVYELLAEWGLPTSPYLR
TSDDLDGVLSFVTHYGEHRHSVEHELDGIVIKVDELALHDELGATSRAPRWAIAYKYPPE
QVNTKLLDIVVSVGRTGRATPFANMKPVLVAGSVVRQATLHNQDVVKAKGVLIGDTVVLR
KAGDVIPEVLGPVAELRDGSERAFVMPANCPECGTPLRPMKEGDIDLRCPNAKDCPAQVR
GRVEHIGSRGALDIEALGEVTAAALTQPEVPAEPPLRTEAGLFDLTMEQLVPIELIVRDG
ETGLPKEDDKGEVRRRSPFRRNPSAAERREGLTGPQPSSQAVKLLEELEKAKTKELWRLL
VSLNIRHVGPVAARALAGWFGSLDAIRAASREELAAVEGVGGIIADSLRDWFEVDWHREI
IDRWTAAGVRFHTPGHPGPGAAAAEGGVLAGVTVVATGTLEGYSREGAQEAIMKAGGKAA
SSVSKKTDFVAAGPGAGSKLAKAEQLGVRIIDAAQFHLLVTEGPDALA
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgccgacatcgagctgcccgacctgaccctcgacgaggcgcgggccgaggcc
gcgaccctcaccgagcagatcctccgcgctcgcgacgcgtactacggcgacgacgccgca
ctcgtcgacgacgcgacatacgacggatggctgcaccggctggaggcgatcgagcgtcgc
cacccggagctgcaggggcaggactcgccgacgcagaccgtcggcgcggccgacgccagc
atgctcgcgcccgtcgagcacgccgagcgcatgctcagtctcgacaacgtcttctccctc
gacgagctgtcggagtggtgcgcgaagaccgaggcgtccgccgggcggtcggtgcgctgg
ctgaccgagctgaagatcgacggcctggccatcgcgctgcggtacgagaacggggtgctc
gtcaccgccgccacccgcggcgacggccgcgtcggcgaggacgtcaccgtgaacgccctc
cgcgtggcgggcatcccggagcgcctcaccggcaccggccatccgcccctcgtggaggtg
cgcggcgaggtcttcatcccggtcgcggcgttcgaggagctgaacgcgctccaggcgcgg
ctgcgcgaccgggtgctctccgaggcgacgggtcgcggcatggacgaggagcgcgcgcag
cgcagcgccgaccgccgcttccccgcgttcgcgaacccgcggaacgccgccagcggcgga
ctccggcagcagctggacaagaagagcgggatggagctggaggccgggcaggcgcgcctg
gactcgctgcgcctctacgtgcacggcatcggcgcgtggcccgatccgcccgtggcgtcg
cagagcgaggtgtacgagctgctggcggagtgggggctcccgacgagcccgtacctgcgg
acctccgacgacctcgacggcgtgctgtcgttcgtcacgcactacggcgagcaccggcac
tccgtcgagcacgagctcgacggcatcgtcatcaaggtcgacgagctcgccctgcacgac
gagctgggcgccaccagccgcgcgcctcggtgggcgatcgcgtacaagtacccgccggag
caggtcaacacgaagctgctcgacatcgtcgtctcggtggggcgcaccggccgcgcgact
ccgttcgccaacatgaagcccgtcctcgtcgcgggcagcgtcgtgcggcaggcgacgctg
cacaaccaggacgtggtgaaggcgaagggcgtgctcatcggagacacggtcgtgctccgg
aaggccggcgacgtgatccccgaggtcctggggccggtggccgagctgcgcgacgggtcg
gagcgcgcgttcgtgatgccggcgaactgccccgagtgcggcacgccgctgcgccccatg
aaggagggcgacatcgacctccgctgcccgaacgcgaaggactgccccgcgcaggtgcgc
ggacgcgtggagcacatcggatcgcgcggcgcactcgacatcgaggccctgggggaggtc
accgcggccgcgctcacgcagccggaggtgcccgccgagccgccgctgcggacggaggcc
ggcttgttcgacctcacgatggagcagctcgtcccgatcgagctcatcgtgcgcgatggc
gagaccggactgccgaaggaggacgacaagggcgaggtgcgtcggcgctcccccttccgg
cgcaatcccagtgcggcggagcgccgggaggggctgaccgggccgcagccgtcgtcgcag
gccgtgaagctcctcgaagagctcgagaaggcgaagacgaaggagctgtggcgcctgctc
gtctccctcaacatccgtcacgtcggccccgtggcggcgcgggcgctggccggatggttc
gggtcgctcgacgcgatccgcgcggcgagccgcgaggagctcgcagcggtcgagggagtc
ggcggcatcatcgccgactcgctgcgggactggttcgaggtcgactggcatcgggagatc
atcgaccgctggaccgccgcgggcgtgcgcttccacacgcccggccatcccggaccaggc
gcggcggccgccgaaggaggggtgctcgccggggtcacggtggtcgccaccggcactctg
gaggggtacagccgcgagggtgcgcaggaggcgatcatgaaggccggcggaaaggcggcg
tcgagcgtgagcaagaagaccgacttcgtcgcggcggggcccggtgccggctccaagctc
gcgaaggccgagcagctcggcgtgcggatcatcgacgcggcgcaattccacctgctcgtg
accgaggggcccgacgcgctggcgtga
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