Pontivivens nitratireducens: G8E03_11810
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Entry
G8E03_11810 CDS
T06480
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mon
Pontivivens nitratireducens
Pathway
mon03030
DNA replication
mon03410
Base excision repair
mon03420
Nucleotide excision repair
mon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G8E03_11810 (ligA)
03410 Base excision repair
G8E03_11810 (ligA)
03420 Nucleotide excision repair
G8E03_11810 (ligA)
03430 Mismatch repair
G8E03_11810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mon03032
]
G8E03_11810 (ligA)
03400 DNA repair and recombination proteins [BR:
mon03400
]
G8E03_11810 (ligA)
Enzymes [BR:
mon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G8E03_11810 (ligA)
DNA replication proteins [BR:
mon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G8E03_11810 (ligA)
DNA repair and recombination proteins [BR:
mon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G8E03_11810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G8E03_11810 (ligA)
MMR (mismatch excision repair)
DNA ligase
G8E03_11810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G8E03_11810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
MazE_antitoxin
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QIK41393
UniProt:
A0A6G7VMS5
LinkDB
All DBs
Position
complement(2378268..2380379)
Genome browser
AA seq
703 aa
AA seq
DB search
MMDDLNIDVTALDGSQAAELLERLADRLGAADTAYHQDDDPIMSDAEYDRIKALALAVEE
RFPELIREDSPSRKVGAPVAEGFGKVAHTVAMLSLSNVFSDEDVTEFDARVRRFLGVEHA
IDYTAEPKIDGLSLSLRYEGGVLVQAATRGDGETGENVTANARTIDDIPETLTDAPDVLE
VRGEVYMDHADFQSLNARQIEAGAKPFANPRNAAAGSLRQLDAEITRSRPLRFFAYAWGA
LSAPLAETQADAIAKLAELGFRTNPLTKLCHSAEEMIAHYHRIGIARPDLGYDIDGVVYK
VDDLALQKRLGFRSNNPRWATAHKFPAEIAATRLRDIEIQVGRTGALSPVARLEPVTVGG
VVVSNATLHNADYIAGRDSKGAEIRDGIDIRIGDMVEIYRAGDVIPKVRGVLLDRRPDDA
EPYVFPTHCPVCGSPALREPGEAVHRCTGALTCPAQAVEKLKHFVSRMAFDIDGLGAKQV
EAFHADGWIASPADIFALEDRYGSGLKQLKNREGWGQKSADALFAAIRDRRTIPLNRLIF
GLGIRHVGESSAMLLARHYNSWQTFRRAMEAATPGSTERAELVAINGIGDVMAEAIADFF
ASDTARAQLDALTEWLTIEDVAAPATDGSPVAGKTVVFTGTLEQMTRAEAKARAEEMGAK
VSGSVSSRTDIVIAGPGAGSKEKKARDLGLTVLSEAEWLELIG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgacttgaacattgatgtgaccgcactggacggttcgcaggccgccgaactt
ctcgaacggctcgcggatcgactgggggctgccgatacggcctatcatcaggacgacgat
ccgatcatgtccgacgcggagtacgaccggatcaaggcgcttgccctggcggtggaggaa
cggttccccgaactgatccgcgaggacagcccctcacgcaaggtcggcgcaccggtggcg
gaggggttcggcaaggttgcgcacacggtcgcgatgctctcgctttccaacgtcttctcg
gatgaggacgtgacggaattcgatgcccgcgtgcggcggtttctcggcgtcgaacatgcg
atcgactatactgcggaacccaagatcgacgggctgtcgctgtccttgcgatatgagggc
ggtgttctggtgcaggccgccacacgcggcgacggcgaaacgggtgagaatgtgaccgcc
aacgcccgcacaatcgacgatatccccgaaaccctcaccgatgcacccgatgtgctggag
gtccggggtgaggtctatatggaccacgccgatttccagtccctgaacgcccgtcagatc
gaagcgggtgccaagcccttcgcgaatccgcgcaatgccgccgccggatccttgcgccaa
ctggatgcggagattaccagatcccgcccgctgcgctttttcgcctatgcctggggcgcg
ctttccgcccctctggctgaaacgcaagcggacgccatcgcgaagctggcggagctggga
tttcgcaccaaccctctgacgaaactgtgtcattcggccgaggagatgatcgcgcattat
caccggatcggcatcgcgcggcctgatttgggctacgatatcgacggtgtcgtctacaag
gtcgatgatctggccttgcagaaacggctcgggttccggtcgaacaatccacgctgggcc
accgcccataaattcccggccgaaatcgcggcgacccgtctgcgcgacatcgaaattcag
gtgggacgcaccggcgcgctcagccccgtcgctcggttggagcctgtgaccgtgggcggc
gtcgtcgtttcaaacgcgacgttgcacaacgccgattatatcgccgggcgcgattccaag
ggggcggaaattcgggacggcatcgacatccgcatcggtgacatggtcgagatttaccgc
gccggcgatgtaattcccaaggtgcgcggcgtgctgctggaccgccgacccgatgacgcg
gaaccctatgtttttcccacgcattgtccggtttgcggcagcccggccctgcgcgaaccc
ggtgaggcggtgcaccggtgcaccggcgctttgacatgcccggcgcaggctgtcgaaaag
ctcaagcatttcgtgtcgcgcatggcattcgatatcgacggtctgggcgccaagcaggtg
gaggctttccacgccgacggctggatcgcctctccggccgatatcttcgcgttggaggac
cgctacggttccggcctcaagcaactgaaaaatcgtgaggggtggggccaaaaatcggcc
gatgcgctgttcgcggcgatccgcgaccgccgcacgatcccgctcaaccggctgatcttc
gggctgggcattcgccatgtcggggaaagctccgccatgctgctggcccgccactacaac
agttggcagacgttccgccgcgcgatggaggcagcaacccccggcagcaccgaacgggcc
gaactggtcgcgatcaacggcatcggggatgtgatggctgaggcgatcgccgatttcttt
gcctccgacaccgcccgcgcgcaactggatgccctgaccgagtggctgaccatcgaggat
gtcgccgcccccgccaccgacggatcgcccgtcgcgggcaagaccgtggtgttcaccggc
acgttggagcagatgacccgcgccgaagcaaaggcccgggcggaggagatgggagcgaag
gtctccggctccgtctcctccaggaccgatatcgtcatcgcgggtcccggcgccggatcg
aaggagaagaaggcccgcgatctgggcctgaccgtgctgagcgaggcggaatggctggag
ttgatcggctga
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