Moritella sp. 36: HWV03_16070
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Entry
HWV03_16070 CDS
T08847
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
moq
Moritella sp. 36
Pathway
moq03030
DNA replication
moq03410
Base excision repair
moq03420
Nucleotide excision repair
moq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
moq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HWV03_16070 (ligA)
03410 Base excision repair
HWV03_16070 (ligA)
03420 Nucleotide excision repair
HWV03_16070 (ligA)
03430 Mismatch repair
HWV03_16070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
moq03032
]
HWV03_16070 (ligA)
03400 DNA repair and recombination proteins [BR:
moq03400
]
HWV03_16070 (ligA)
Enzymes [BR:
moq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HWV03_16070 (ligA)
DNA replication proteins [BR:
moq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HWV03_16070 (ligA)
DNA repair and recombination proteins [BR:
moq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HWV03_16070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HWV03_16070 (ligA)
MMR (mismatch excision repair)
DNA ligase
HWV03_16070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HWV03_16070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QUM90208
LinkDB
All DBs
Position
complement(3642882..3644909)
Genome browser
AA seq
675 aa
AA seq
DB search
MTEQVKQIQTLTLQLEEYNHQYYVLDNPTVPDAEYDRLLRELKQLEIEFPELALATSPTQ
KVGGEALTGFSQIQHEMPMLSLDNVFSEEELLAFEKRLQDRLLTKAEIKFSCEPKLDGLA
VSILYENGDFVRAATRGDGQIGEDISENVKTIKSIPLRLRGDDFPERLEVRGEVFMPKAG
FEQLNINAKKKGEKTFVNPRNAAAGSLRQLDPKIAASRPLAFNAYSLGVVEGEVEGKGLS
NSHAENLQKLKQWGLPVCADVTVAMGYQGCLDFYEQIGKRRDSLSYDIDGVVYKVDDLAL
QKTLGFVARAPRWATSHKFPAQEEITTLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNA
TLHNSDEIARLGIKIKDQVIIRRAGDVIPQVARVMLERRPDDAQDIVFPAKCPVCDSEVE
RIEGEATVRCTAGLYCGAQRKEAIKHFASRKALNVDGLGDKLVEQLVDADLIKTPADLFT
VTFGKLTLLDRMGPKKATNLLEALKVAKHTTLAKFLYSLGIREVGEATAANLANDLLTLD
AIKKASVERLILISDVGDIVAKHIYYFFREAHNLEVIDQLIEAGMSWDDVAVKEESQQPL
LGTIYVITGTLVNISRAEAKTRLQDLGAKVAGSVSKKTTALVAGPAAGSKLTKAQELDID
ILTEDDLLALLATHS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaagtaaaacaaattcaaaccttaacactgcaacttgaagaatataatcac
caatattacgtattagacaatcccaccgtaccggatgcggaatatgaccgtttattacgt
gagctaaaacagctcgaaatcgagtttcctgagcttgcattagccacatctccaactcaa
aaagtggggggggaagctttaactggctttagccagattcagcatgaaatgccaatgttg
tcattggataatgtgttttctgaagaagagttgttagcgttcgaaaagcgtttacaagat
cgtttattaacgaaagcagagattaagtttagctgtgaaccaaagctcgatggtcttgca
gtgagtatcctgtatgagaatggtgactttgttcgtgctgccacccgtggtgatggtcaa
atcggtgaagacatttctgaaaatgtaaaaaccatcaaatcaatcccattacgcttacgt
ggtgatgactttcctgaacgtttagaagtacgtggtgaagtctttatgccaaaagcgggt
tttgagcaattgaatatcaatgccaaaaagaaaggtgaaaagacctttgtcaatccgcgc
aatgccgccgctggtagcttacgtcagcttgaccctaaaattgccgcaagtcgtccgtta
gcctttaatgcctattcattaggtgtcgtggaaggtgaggttgaaggtaaaggcttatca
aattcgcatgccgaaaatttacaaaaattgaagcaatggggtttacctgtttgtgcagat
gtaacggttgctatgggttatcaaggctgcttagacttctatgaacagattggtaagcgc
cgtgattcactgtcgtatgacattgatggtgtcgtgtataaagtcgatgatttagcccta
cagaaaacattgggttttgttgcgcgagcaccacgttgggccacgtcacataagtttcct
gcgcaagaagagataacgacattattggatgttgaattccaagttggccgtactggcgca
atcacaccggtcgcacgtctagaacctgtgtttgttggtggtgtgacagtaagtaatgcc
acactacataactctgatgaaattgcccgtttaggcattaaaattaaagatcaggtgatc
attcgccgtgcgggtgatgttattccgcaggttgcgcgtgtgatgctagagcgccgccct
gatgatgcccaagatatcgtattcccggcaaagtgcccagtgtgtgattcagaagtagag
cgtatcgaaggtgaagcaacagtgcgttgtaccgctggtctgtattgtggtgcacaacgt
aaagaagcgattaaacattttgcatcgcgtaaagcgctaaacgttgatggtttgggtgac
aagcttgttgagcaattggttgatgctgatttaattaaaaccccagccgacctatttacc
gtgacttttgggaagttaaccctgttagatcgcatggggccaaagaaagccactaactta
ttagaagcattaaaagtagcaaaacacaccacgttagccaagttcttatattcactgggt
attcgtgaagtaggggaagcgacagcggctaacttagccaatgatttgttaactttagac
gcaatcaaaaaagcctctgtagaacgcttaattctgatttcggatgtcggtgatattgtt
gctaaacacatttactacttcttccgtgaagcgcataaccttgaagtgattgaccagcta
attgaagcgggcatgagctgggatgatgttgcggttaaagaagaaagtcagcaacccttg
ttaggcactatttatgtgatcaccggaacgttagtgaatatctctcgtgccgaggctaaa
acacggttacaagatttaggcgcaaaagtggctggtagtgtgtcgaagaaaacgacggcg
ttagtggcaggtcctgcagcaggttctaagctcactaaagcgcaagagttagacatagat
attctgactgaagatgatttactggcactcttagctacacatagttaa
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integrated database retrieval system
